BUSCADOR RECOLECTA

The R code for carrying out the meta-analysis is provided in file "global_fire_analysis_240325.R". The database is provided in the file "global_fire_DB_240325.csv". The columns in the file are described below: study_id: study identification, composed of the name of the first author and the year of publication. study_num: study number. ES_num: number of effect size within study. country: country where the study was carried out. latitude/longitude: coordinates indicating where the study was carried out. FR_hist: type of historical fire regime (surface fire, crown fire, or non fire prone). FR_comp: fire regime component (frequency or severity). fire_type: type of fire (wildfire or prescribed fire). habitat: type of habitat (broadleaf forest, conifer forest, mixed forest, grassland, shrubland, or woodland). response: broad response variable measured (abundance, diversity, or fitness). response_detailed: more detailed response variable measured (e.g., size or biomass, density or frequency, Shannon or Simpson indices, gamma diversity, survival). TSF_months: time since fire in months. TSF_factor: factor variable of time since fire (short, 24 months or less, or long, more than 24 months). PLF: plant life form studied (woody plant, herb, or bryophyte). climate: climate prevalent in the study region (arid, cold, temperate with a dry season, temperate without a dry season, or tropical). Xtreat1_type: type of crossed factor number one. Xtreat1_fact: category for crossed factor number one. Xtreat2_type: type of crossed factor number two. Xtreat2_fact: category for crossed factor number two. surface-crown: type of change in fire behaviour with intensification of fire regime (surface to crown, surface to surface, or crown to crown). eff_n: effective sample size. d_Hedges: Hedges’ d. var_Hedges: variance of Hedges’ d. imputed: whether the effect size was imputed or not. source: source of the data used to calculate the effect size (e.g., Table1, Figure2, main text). 'NA' indicate missing values, e.g., because they were not reported in the source study, or because the variable does not apply to that study., Database of responses of plant abundance, diversity, and fitness to increased fire frequency or severity, collected from published scientific articles or reports. The database includes 394 studies published worldwide between 1962 and 2023. Information on the following variables are also provided: fire regime component (fire frequency or severity), time since the last fire, fire type (wildfire or prescribed fire), historical fire regime type (surface or crown fire), plant life form (woody plant, herb, or bryophyte), habitat type, and climate. The database underpins the meta-analysis 'Global plant responses to intensified fire regimes', published in Global Ecology and Biogeography., Generalitat Valenciana: Prometeo/2021/040 European Union: Horizon 2020 - 101003890, Peer reviewed

Context-dependent dispersal allows organisms to seek and settle in habitats improving their fitness. Despite the importance of species interactions in determining fitness, a quantitative synthesis on how they affect dispersal is lacking. We present a meta-analysis asking (1) whether the interaction experienced and/or perceived by a focal species (detrimental interaction with predators, competitors, parasites, or beneficial interaction with resources, hosts, mutualists) affects its dispersal, (2) how the species’ ecological and biological background affects the direction and strength of this interaction-dependent dispersal. After a systematic search focusing on actively dispersing species, we extracted 397 effect sizes from 118 empirical studies encompassing 221 species pairs; arthropods were best represented, followed by vertebrates, protists and others. Detrimental species interactions increased the focal species’ dispersal (adjusted effect: 0.33 [0.06,0.60]), while beneficial interactions decreased it (-0.55 [-0.92,-0.17]). The effect depended on the dispersal phase, with detrimental interactors having opposite impacts on emigration and transience. Interaction-dependent dispersal was negatively related to species’ interaction strength, and depended on the global community composition, with cues of presence having stronger effects than presence of the interactor, and the ecological complexity of the community. Our work demonstrates the importance of interspecific interactions on dispersal plasticity with consequences for metacommunity dynamics., Peer reviewed

Raw data extracted from the videos of wolves and jackals feeding simultaneously on a carcass in Maharashtra (India). A legend is included in the archive., TRIADIC Project, Peer reviewed

The chronological information provided by sediment cores about the beginning and evolution of anthropogenic contaminants is crucial for understanding the influence of humans on the environment. The dataset provides information about the vertical distribution of heavy metals (HMs), metalloids and various organic contaminants (OCs) including contemporary contaminants of emerging concern (CECs), such as pharmaceuticals and personal care products (PPCPs) and pesticides; as well as persistent organic contaminants (POPs) such as polycyclic aromatic hydrocarbons (PAHs), perfluoroalkyl substances (PFASs), organophosphorus flame retardants (OPFRs) in sediment cores of two different sampling areas (North and South) of L'Albufera lake. Additional information about the 14C-data of the organic matter present in the different layers of the sediment cores, and the 14C-data of the seashells found in some of them are shown. The dataset includes physico-chemical analyses of sediment characteristics at the different selected depth levels such as Organic Carbon (Corg), Inorganic Carbon (IC), Total Nitrogen (TN), Total Sulphur (TS) and texture. Furthermore, ecological risk assessment of these contaminants in surface sediment layers is performed to ascertain is potential toxicity. These data supplement the findings presented and considered in the research article “Exploring Organic and Inorganic Contaminant Histories in Sediment Cores Across the Anthropocene: Accounting for Site/Area Dependent Factors”. Therefore, these data altogether are useful for researchers seeking to assess long-term impact of contamination., This work has been supported by the Grant CIPROM/2021/032 funded by the Generalitat Valenciana. Y. Soriano acknowledges her pre-doctoral contract by the grant PRE2019-089042 funded by MCIN/AEI/ 10.13039/501100011033 and by “ESF Investing in your future”. The instrumental used in this study has been supported by the project IDFEDER-2021-083 “X-ray of pollution and the effects of the anthropocene/climate change binomial (X pollutants)” action co-financed by the EU through the operational program of the European Regional Development Fund (ERDF) of the Valencian Community 2014–2020., Peer reviewed

The dataset presents information on the vertical distribution of contaminants, covering legacy heavy metals, emerging contaminants like pharmaceuticals, personal care products, and pesticides, as well as persistent organic pollutants in sediment cores from two areas (North and South) of L'Albufera lake. It includes 14C-data for organic matter and seashells, along with physico-chemical analyses of sediment characteristics at various depth levels. Additionally, an ecological risk assessment is conducted to determine potential toxicity in the surface sediment layers., Peer reviewed

Peer reviewed

Supplementary Information S1: representative videos showing S. ratti L3 with indicated motility Scores, Peer reviewed

(A) Left panel, surface representation of the AliD:permease complex predicted by AF. Each protein is color-coded and labeled accordingly. CH: coupling helix. (B) Different configurations of the NBDs in the inward (closed, upper panel) and outward (open, lower panel) conformations. AmiF and AmiD are represented in cartoon form, and the ATP molecules are shown as spheres. (C) View corresponding to a slice located at the blue plane depicted in A, right panel. The upper panel highlights the identified hydrophobic residues that obstruct the channel in the inward, closed conformation. In contrast, the lower panel shows the location of the same residues in the outward, open conformation. The generated cavity, presumably allowing oligopeptide transport, is marked in blue and outlined with a dashed black line. Relevant residues are labeled and represented as spheres. (D) Different proteins of the Ami system and conceptual schematic model for the mechanism of oligopeptide transport., Peer reviewed

(A) Right panel, molecular electrostatic potential surface (MEPS) of AliB’s lobe 2 is shown. The three peptides complexed with AliB are depicted as capped sticks with colors orange (peptide 2), green (peptide 3) and cyan (peptide 4). The oligopeptide positions 1 to 4 and the pockets P1 to P4 are labeled. Left panel, cartoon representation corresponding to the boxed area displayed in the right panel. Conserved Aspartate (D) and Tryptophan (W) residues are depicted in capped gray sticks. The residue F521, crucial for stabilizing the lateral chain in oligopeptide position 2, is also shown as capped gray sticks. (B) Right panel, MEPS of AmiA’s lobe 2 is shown. The peptide corresponding to the AmiA:peptide 5 complex is depicted in capped sticks (colored green). The oligopeptide positions 1 to 4 and the pockets P1 to P4 are labeled. Left panel, cartoon representation corresponding to the boxed area is in the right panel is displayed. Conserved Asp (D) and Trp (W) residues are depicted as capped deep olive sticks. The residue E524, critical for stabilizing the lateral chain in oligopeptide position 2, is also shown as capped gray sticks. Polar interactions are represented with dashed black lines. R1 and R2 represent variable regions 1 and 2, respectively. The small panel between panels A and B provides a view of a typical Ami OBP with both lobes indicated. The black dashed line between the two lobes indicates the position of the slice required to obtain the view of the MEPS of lobe 2 for both panels A and B. (C) Structural superposition of lobe 2 for the five Ami OBPs is presented, with a focus on strand β20. Regions R1 and R2 are indicated. (D) Schematic cartoon representing the relevant OBP structural features involved in oligopeptide recognition (colored in pink)., Peer reviewed

(A) Schematic representation illustrating the different elements composing the lipoproteins of the Ami system. Distinctive coloring is applied to each domain. (B) Alignment of sequences encompassing the signal peptide (in yellow), the lipobox (in red) and the linker region (in gray) in the five lipoproteins of the Ami system. The cysteine residue designated for lipidation is denoted by a black arrow., Peer reviewed