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Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85523
Dataset. 2013

MICROSATELLITE DATA, DNA SEQUENCES AND GENBANK CODES FROM 240 TRUMPETER FINCHES (BUCANETES GITHAGINEUS) FROM THE IBERIAN PENINSULA, CANARY ISLANDS, MAGHREB, WESTERN SAHARA AND NEAR EAST

  • Barrientos, Rafael
  • Kyist, L.
  • Barbosa, Andrés
  • Valera, Francisco
  • Khoury, S.
  • Valera, S.
  • Moreno, Eulalia
Methodology: Sampled 271 birds from 16 populations. Samples include both fresh and 142 museum samples. Fresh samples were obtained mainly by mist-netting, but also occasionally by 143 sampling a single chick from every nest. DNA was extracted with the standard phenol-chloroform method. Museum samples were extracted in a separate room using a fume hood with UV-light exposure prior to 147 the extraction. Seven microsatellite loci; Lox1, Lox2 and Lox8 (Piertney et al. 1998), Ppi2 (Martínez et 148 al. 1999), Pocc6 (Bensch et al. 1997), Pdo5 (Griffith et al. 1999) and Pk12 (GenBank accession no. 149 AF041466) were amplified using the procedure detailed in Barrientos et al. (2009b). Microsatellites 150 were run on ABI3730 and scored with GeneMapper v. 3.7 (Applied Biosystems, Foster City, CA, USA). 151 Part of the mitochondrial control region was amplified using primers TrfinchL20 and 152 passeriformesH830 which amplify most of 153 domains I and II of the control region. The museum samples were amplified in two or three fragments using primers TrfinchL20 and TrfinchH465, TrfinchL410 and PasseriformesH830, TrfinchL20 and 155 TrfinchH262, TrfinchL208 and TrfinchH465, TrfinchL410 and TrfinchH649 or TrfinchL585 and 156 PasseriformesH830. PCR was performed in 10 μl volumes 157 containing about 50 ng of template DNA (1-5μl) , 0.5 μM of each primer (0.5 μl each), 0.2 mM of each 158 dNTP (1 μl), 1 μL of 10 x PCR buffer (2.0 mM MgCl2) and 0.06 μl of DNA-polymerase (Biotools, 5U/ 159 μl). The PCR protocol was 94ºC for 2 min followed by 37 cycles of 94ºC for 30 s, 50ºC for 45 s and 160 72ºC for 30 s with a final extension in 72ºC for 5 min. The Egyptian samples required a secondary PCR 161 using 1 μL of the primary PCR product as template. Sequencing of the PCR-products was performed 162 with BigDye v. 3.1 using primers TrfinchH262, TrfinchH465, TrfinchL410, TrfinchL585 or 163 PasseriformesH830. Half of the museum samples were sequenced twice to check for consistency of the 164 sequences. Sequencing reactions were run on an ABI3730. All sequences are available in GenBank 165 (accession numbers JX452830-JX453004 and JX453005-JX453016)., R Barrientos received financial assistance from an FPI fellowship from the Spanish Ministry of Education and Science, from JCCM-FSE 2007/2013 postdoctoral program and from Juan de la Cierva program from the Spanish Ministry of Competitiveness. S. Varela is supported by the project: “Support of establishment, development, and mobility of quality research teams at the Charles University“, registration number CZ.1.07/2.3.00/30.0022, supported by The Education for Competitiveness Operational Programme (ECOP) funded by the ESF and the government budget of the Czech Republic.The Spanish Ministry of Education and Science through its Project REN2002-00169 588 and CGL2005-01771, the European Regional Development Fund and the University of Oulu provided the financial support for this study., The data are structured in 5 different files File 1: PDF file containing microsatellite data for 7 microsatellite loci (Lox1, Lox2, Lox8, Ppi2, Pocc6, Pk12, Pdo5) from 240 trumpeter finches from the Iberian Peninsula, Canary Islands, Maghreb, Western Sahara and Near East Files 2 and 3: DNA sequences and 240 GenBank accession numbers from two data sets from mitochondrial control region of the Trumpeter finch (Bucanetes githagineus), one containing 576 bp long sequences from 175 individuals (14 from Gorafe, 11 from Cabo de Gata, 10 from Monnegre, 20 from Tabernas, 16 from Lanzarote, 19 from Fuerteventura, 3 from Tenerife, 1 from La Gomera, 28 from Morocco, 7 from Tunisia & Algeria, 10 from Western Sahara, 2 from Egypt, 27 from Jordan, 4 from Israel and 3 from Iran) and the other containing 194 bp from 187 individuals (the same than before plus 8 from Egypt, 2 from Tunisia, 1 from Algeria and 1 from Israel, due to failure to sequence the whole fragment from these twelve individuals). Files 4 and 5: Samples used, including population of origin, tissue from where DNA was extracted, source, code (ring or museum label) and GenBank accession numbers., Peer reviewed

Proyecto: //
DOI: http://hdl.handle.net/10261/85523
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85523
HANDLE: http://hdl.handle.net/10261/85523
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85523
PMID: http://hdl.handle.net/10261/85523
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85523
Ver en: http://hdl.handle.net/10261/85523
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85523

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85526
Dataset. 1964

VALENCIANA

  • Herrero Catalina, Joaquín
1 .pdf (1 Pag.) con texto descriptivo y 1 Fig. This EEAD-CSIC database – Variedades frutales de hueso y pepita is made available under the Open Database License: http://opendatacommons.org/licenses/odbl/1.0/. Any rights in individual contents of the database are licensed under the Database Contents License: http://opendatacommons.org/licenses/dbcl/1.0/., [ES] Caracterización pomológica, período de maduración e ilustración del fruto de esta variedad de manzano descrita en la Cartografía de frutales de hueso y pepita (Herrero J et al., 1964)., [EN] Pomological characterization, maturation time and fruit figure of apple cultivar described in “Cartografía de frutales de hueso y pepita” (Herrero J et al., 1964).

Proyecto: //
DOI: http://hdl.handle.net/10261/85526
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85526
HANDLE: http://hdl.handle.net/10261/85526
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85526
PMID: http://hdl.handle.net/10261/85526
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85526
Ver en: http://hdl.handle.net/10261/85526
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85526

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85528
Dataset. 1964

ABRE HUESO

  • Herrero Catalina, Joaquín
1 .pdf (1 Pag.) con texto descriptivo y 1 Fig. This EEAD-CSIC database – Variedades frutales de hueso y pepita is made available under the Open Database License: http://opendatacommons.org/licenses/odbl/1.0/. Any rights in individual contents of the database are licensed under the Database Contents License: http://opendatacommons.org/licenses/dbcl/1.0/., [ES] Caracterización pomológica, período de maduración e ilustración del fruto de esta variedad de ciruelo descrita en la Cartografía de frutales de hueso y pepita (Herrero J et al., 1964)., [EN] Pomological characterization, maturation time and fruit figure of plum cultivar described in “Cartografía de frutales de hueso y pepita” (Herrero J et al., 1964).

Proyecto: //
DOI: http://hdl.handle.net/10261/85528
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85528
HANDLE: http://hdl.handle.net/10261/85528
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85528
PMID: http://hdl.handle.net/10261/85528
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85528
Ver en: http://hdl.handle.net/10261/85528
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85528

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85529
Dataset. 1964

DE LA VENDIMIA

  • Herrero Catalina, Joaquín
1 .pdf (1 Pag.) con texto descriptivo y 1 Fig. This EEAD-CSIC database – Variedades frutales de hueso y pepita is made available under the Open Database License: http://opendatacommons.org/licenses/odbl/1.0/. Any rights in individual contents of the database are licensed under the Database Contents License: http://opendatacommons.org/licenses/dbcl/1.0/., [ES] Caracterización pomológica, período de maduración e ilustración del fruto de esta variedad de manzano descrita en la Cartografía de frutales de hueso y pepita (Herrero J et al., 1964)., [EN] Pomological characterization, maturation time and fruit figure of apple cultivar described in “Cartografía de frutales de hueso y pepita” (Herrero J et al., 1964).

Proyecto: //
DOI: http://hdl.handle.net/10261/85529
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85529
HANDLE: http://hdl.handle.net/10261/85529
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85529
PMID: http://hdl.handle.net/10261/85529
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85529
Ver en: http://hdl.handle.net/10261/85529
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85529

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85530
Dataset. 1964

PICOTA 289

  • Herrero Catalina, Joaquín
1 .pdf (1 Pag.) con texto descriptivo y 1 Fig. This EEAD-CSIC database – Variedades frutales de hueso y pepita is made available under the Open Database License: http://opendatacommons.org/licenses/odbl/1.0/. Any rights in individual contents of the database are licensed under the Database Contents License: http://opendatacommons.org/licenses/dbcl/1.0/., [ES] Caracterización pomológica, período de maduración e ilustración del fruto de esta variedad de cerezo descrita en la Cartografía de frutales de hueso y pepita (Herrero J et al., 1964)., [EN] Pomological characterization, maturation time and fruit figure of cherry cultivar described in “Cartografía de frutales de hueso y pepita” (Herrero J et al., 1964).

Proyecto: //
DOI: http://hdl.handle.net/10261/85530
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85530
HANDLE: http://hdl.handle.net/10261/85530
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85530
PMID: http://hdl.handle.net/10261/85530
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85530
Ver en: http://hdl.handle.net/10261/85530
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85530

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85534
Dataset. 1964

ABUNDANCE

  • Herrero Catalina, Joaquín
1 .pdf (1 Pag.) con texto descriptivo y 1 Fig. This EEAD-CSIC database – Variedades frutales de hueso y pepita is made available under the Open Database License: http://opendatacommons.org/licenses/odbl/1.0/. Any rights in individual contents of the database are licensed under the Database Contents License: http://opendatacommons.org/licenses/dbcl/1.0/., [ES] Caracterización pomológica, período de maduración e ilustración del fruto de esta variedad de ciruelo descrita en la Cartografía de frutales de hueso y pepita (Herrero J et al., 1964)., [EN] Pomological characterization, maturation time and fruit figure of plum cultivar described in “Cartografía de frutales de hueso y pepita” (Herrero J et al., 1964).

Proyecto: //
DOI: http://hdl.handle.net/10261/85534
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85534
HANDLE: http://hdl.handle.net/10261/85534
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85534
PMID: http://hdl.handle.net/10261/85534
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85534
Ver en: http://hdl.handle.net/10261/85534
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85534

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85537
Dataset. 1964

VERDE 1709

  • Herrero Catalina, Joaquín
1 .pdf (1 Pag.) con texto descriptivo y 1 Fig. This EEAD-CSIC database – Variedades frutales de hueso y pepita is made available under the Open Database License: http://opendatacommons.org/licenses/odbl/1.0/. Any rights in individual contents of the database are licensed under the Database Contents License: http://opendatacommons.org/licenses/dbcl/1.0/., [ES] Caracterización pomológica, período de maduración e ilustración del fruto de esta variedad de manzano descrita en la Cartografía de frutales de hueso y pepita (Herrero J et al., 1964)., [EN] Pomological characterization, maturation time and fruit figure of apple cultivar described in “Cartografía de frutales de hueso y pepita” (Herrero J et al., 1964).

Proyecto: //
DOI: http://hdl.handle.net/10261/85537
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85537
HANDLE: http://hdl.handle.net/10261/85537
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85537
PMID: http://hdl.handle.net/10261/85537
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85537
Ver en: http://hdl.handle.net/10261/85537
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85537

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85539
Dataset. 1964

VERDEDONCELLA

  • Herrero Catalina, Joaquín
1 .pdf (1 Pag.) con texto descriptivo y 1 Fig. This EEAD-CSIC database – Variedades frutales de hueso y pepita is made available under the Open Database License: http://opendatacommons.org/licenses/odbl/1.0/. Any rights in individual contents of the database are licensed under the Database Contents License: http://opendatacommons.org/licenses/dbcl/1.0/., [ES] Caracterización pomológica, período de maduración e ilustración del fruto de esta variedad de manzano descrita en la Cartografía de frutales de hueso y pepita (Herrero J et al., 1964)., [EN] Pomological characterization, maturation time and fruit figure of apple cultivar described in “Cartografía de frutales de hueso y pepita” (Herrero J et al., 1964).

Proyecto: //
DOI: http://hdl.handle.net/10261/85539
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85539
HANDLE: http://hdl.handle.net/10261/85539
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85539
PMID: http://hdl.handle.net/10261/85539
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85539
Ver en: http://hdl.handle.net/10261/85539
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85539

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85541
Dataset. 1964

VERDINAL

  • Herrero Catalina, Joaquín
1 .pdf (1 Pag.) con texto descriptivo y 1 Fig. This EEAD-CSIC database – Variedades frutales de hueso y pepita is made available under the Open Database License: http://opendatacommons.org/licenses/odbl/1.0/. Any rights in individual contents of the database are licensed under the Database Contents License: http://opendatacommons.org/licenses/dbcl/1.0/., [ES] Caracterización pomológica, período de maduración e ilustración del fruto de esta variedad de manzano descrita en la Cartografía de frutales de hueso y pepita (Herrero J et al., 1964)., [EN] Pomological characterization, maturation time and fruit figure of apple cultivar described in “Cartografía de frutales de hueso y pepita” (Herrero J et al., 1964).

Proyecto: //
DOI: http://hdl.handle.net/10261/85541
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85541
HANDLE: http://hdl.handle.net/10261/85541
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85541
PMID: http://hdl.handle.net/10261/85541
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85541
Ver en: http://hdl.handle.net/10261/85541
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85541

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85546
Dataset. 1964

VERDOSA

  • Herrero Catalina, Joaquín
1 .pdf (1 Pag.) con texto descriptivo y 1 Fig. This EEAD-CSIC database – Variedades frutales de hueso y pepita is made available under the Open Database License: http://opendatacommons.org/licenses/odbl/1.0/. Any rights in individual contents of the database are licensed under the Database Contents License: http://opendatacommons.org/licenses/dbcl/1.0/., [ES] Caracterización pomológica, período de maduración e ilustración del fruto de esta variedad de manzano descrita en la Cartografía de frutales de hueso y pepita (Herrero J et al., 1964)., [EN] Pomological characterization, maturation time and fruit figure of apple cultivar described in “Cartografía de frutales de hueso y pepita” (Herrero J et al., 1964).

Proyecto: //
DOI: http://hdl.handle.net/10261/85546
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85546
HANDLE: http://hdl.handle.net/10261/85546
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85546
PMID: http://hdl.handle.net/10261/85546
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85546
Ver en: http://hdl.handle.net/10261/85546
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/85546

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