BUSCADOR RECOLECTA

Ghent University European Commission Research Foundation - Flanders Junta de Andalucía, Peer reviewed

Additional file 9. Supplementary Tables S1-6 (.xlsx)., Ghent University European Commission Research Foundation - Flanders Junta de Andalucía, Peer reviewed

Additional file 10. BED file with stable and differential HiChIP loops in neural retina and RPE/choroid, with annotation of interacting cis-regulatory elements (CREs, from [4])., Ghent University European Commission Research Foundation - Flanders Junta de Andalucía, Peer reviewed

Additional file 11. Peer review history., Ghent University European Commission Research Foundation - Flanders Junta de Andalucía, Peer reviewed

This upload corresponds to large supplementary data files., Peer reviewed

21 páginas, 1 figura, 7 tablas, Peer reviewed

21 páginas, 16 figuras, Peer reviewed

Peer reviewed

The pharyngeal gene architectures are shown for presumed last common ancestors at key phylogenetic nodes (a) and selected living metazoan species (b) (see S26 Fig for the complete dataset). Genes that are commonly linked together are shown in the same color; homeobox-containing genes, including nkx2.1, nkx2.2 and msx, are in green, mipol1 and foxa genes are in blue, and pax1/9 and slc25a21 are in red. The gray circles indicate genes that are located within the pharyngeal gene cluster. Double slashes are introduced when more than 3 genes are located in between 2 pharyngeal genes. Because pax genes of cnidarians and sponges do not show one-to-one correspondence with those of bilaterians, we surveyed the locations of all potential pax genes and found that none is linked with the other pharyngeal-related genes in cnidarians and sponges., Peer reviewed

GO enrichment analysis of genes located in the sea star POC9 (a), sea urchin SPU1 (b), hemichordate PFL18 (c), and PFL9 (d). The echinoderm chromosomes (POC12 and SPU3) corresponding to deuterostome DALG R were also analyzed to understand the chordate-specific chromosomal dispersion (e). The enriched GO terms (adjusted p-value <0.1) are clustered and divided into different modules, and selected terms are underlined. The top 3 enriched BP GO terms of each module are shown in S17–S19 Figs. The data underlying this figure can be found in S2, S3, and S4 Data. BP, biological process; GO, gene ontology., Peer reviewed