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Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/268088
Dataset

SPEIBASE V.2.7 [DATASET]

  • Beguería, Santiago
  • Vicente Serrano, Sergio M.
  • Reig-Gracia, Fergus
  • Latorre Garcés, Borja
The Global 0.5° gridded SPEI dataset is made available under the Open Database License. Any rights in individual contents of the database are licensed under the Database Contents License. Users of the dataset are free to share, create and adapt under the conditions of attribution and share-alike. The Global SPEI database, SPEIbase, offers long-time, robust information on the drought conditions at the global scale, with a 0.5 degrees spatial resolution and a monthly time resolution. It has a multi-scale character, providing SPEI time-scales between 1 and 48 months. The Standardized Precipitatin-Evapotranspiration Index (SPEI) expresses, as a standardized variate (mean zero and unit variance), the deviations of the current climatic balance (precipitation minus evapotranspiration potential) with respect to the long-term balance. The reference period for the calculation, in the SPEIbase, corresponds to the whole study period. Being a standardized variate means that the SPEI condition can be compared across space and time. Calculation of the evapotranspiration potential in SPEIbase is based on the FAO-56 Penman-Monteith method. Data type: float; units: z-values (standard deviations). No land pixels are assigned a value of 1.0x10^30. In some rare cases it was not possible to achieve a good fit to the log-logistic distribution, resulting in a NAN (not a number) value in the database. Dimensions of the dataset: lon = 720; lat = 360; time = 1356. Resolution of the dataset: lon = 0.5º; lat = 0.5º; time = 1 month. Created in R using the SPEI package (http://cran.r-project.org/web/packages/SPEI)., Global gridded dataset of the Standardized Precipitation-Evapotranspiration Index (SPEI) at time scales between 1 and 48 months.-- Spatial resolution of 0.5º lat/lon.-- This is an update of the SPEIbase v2.6 (https://digital.csic.es/handle/10261/202305).-- What’s new in version 2.7: 1) Based on the CRU TS 4.05 dataset, spanning the period between January 1901 to December 2020. Using TLMoments::PWM instead of lmomco::pwm.ub for calculating distribution parameters. For more details on the SPEI visit http://sac.csic.es/spei, Peer reviewed

Proyecto: //
DOI: http://hdl.handle.net/10261/268088
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/268088
HANDLE: http://hdl.handle.net/10261/268088
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/268088
PMID: http://hdl.handle.net/10261/268088
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/268088
Ver en: http://hdl.handle.net/10261/268088
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/268088

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/268139
Dataset

DATASET SUPPORTING PUBLICATION "DOMAIN WALL AUTOMOTION IN THREE-DIMENSIONAL MAGNETIC HELICAL INTERCONNECTORS"

  • Skoric, Luka
  • Donnelly, Claire
  • Hierro-Rodríguez, A.
  • Cascales Sandoval, Miguel A.
  • Ruiz-Gómez, Sandra
  • Foerster, Michael
  • Niño Orti, Miguel A.
  • Belkhou, Rachid
  • Abert, Claas
  • Suess, Dieter
  • Fernández-Pacheco, Amalio
Preliminary measurements were performed at HERMES beamline at SOLEIL synchrotron in collaboration with SOLEIL staff, proposal nos. 20200879, 20190565 and 20170904. This work was supported by the EPSRC Cambridge NanoDTC EP/L015978/1,the Winton Program for the Physics of Sustainability, the project CALIPSOplus under Grant Agreement 730872 from the EU Framework Programme for Research and Innovation HORIZON 2020, and by the European Community under the Horizon 2020 Program, Contract no. 101001290, 3DNANOMAG. L. Skoric acknowledges support from St Johns College of the University of Cambridge. C. Donnelly was supported by the Leverhulme Trust (ECF-2018-016), the Isaac Newton Trust (18-08) and the L'Oréal-UNESCO UK and Ireland Fellowship For Women In Science. A. Hierro-Rodriguez acknowledges support from Spanish AEI under project reference PID2019104604RB/AEI/10.13039/501100011033. The authors acknowledge the University of Vienna research platform MMM Mathematics -Magnetism - Materials, and the FWF project I4917., Peer reviewed

DOI: http://hdl.handle.net/10261/268139, https://doi.org/10.20350/digitalCSIC/14613
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/268139
HANDLE: http://hdl.handle.net/10261/268139, https://doi.org/10.20350/digitalCSIC/14613
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/268139
PMID: http://hdl.handle.net/10261/268139, https://doi.org/10.20350/digitalCSIC/14613
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/268139
Ver en: http://hdl.handle.net/10261/268139, https://doi.org/10.20350/digitalCSIC/14613
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/268139

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/268516
Dataset

DATASET TO ACCOMPANY "FRONTAL CONVERGENCE AND VERTICAL VELOCITY MEASURED BY DRIFTERS IN THE ALBORAN SEA"

  • Tarry, Daniel R.
  • Essink, Sebastian
  • Pascual, Ananda
  • Ruiz, Simón
  • Poulain, Pierre-Marie
  • Özgökmen, Tamay
  • Centurioni , Luca Raffaele
  • Farrar, J. Thomas
  • Shcherbina, Andrey
  • Mahadevan, Amala
  • D'Asaro, Eric A.
This dataset contains the data used in the publication "Frontal Convergence and Vertical Velocity measured by Drifters in the Alboran Sea"., This research was supported by the Office of Naval Research (ONR) Departmental Research Initiative CALYPSO under program officers Terri Paluszkiewicz and Scott Harper., Peer reviewed

Proyecto: //
DOI: http://hdl.handle.net/10261/268516, https://doi.org/10.20350/digitalCSIC/14620
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/268516
HANDLE: http://hdl.handle.net/10261/268516, https://doi.org/10.20350/digitalCSIC/14620
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/268516
PMID: http://hdl.handle.net/10261/268516, https://doi.org/10.20350/digitalCSIC/14620
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/268516
Ver en: http://hdl.handle.net/10261/268516, https://doi.org/10.20350/digitalCSIC/14620
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/268516

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269275
Dataset

DATA FROM: THREE NEW SYNONYMS OF RUNGIA STOLONIFERA (ACANTHACEAE) FROM CHINA AND VIETNAM

  • Lin, Zheli
  • Do, Van Hai
  • Deng, Yunfei
Examination of relevant type materials and living plants reveals that Rungia axilliflora, R. densiflora and R. evrardii are conspecific with R. stolonifera. Lectotypes are designated for the names R. evrardii and R. stolonifera., Peer reviewed

Proyecto: //
DOI: http://hdl.handle.net/10261/269275
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269275
HANDLE: http://hdl.handle.net/10261/269275
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269275
PMID: http://hdl.handle.net/10261/269275
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269275
Ver en: http://hdl.handle.net/10261/269275
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269275

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269511
Dataset

DATA FROM: DYNAMIC ANTAGONISM BETWEEN PHYTOCHROMES AND PIF-FAMILY BHLHS INDUCES SELECTIVE RECIPROCAL RESPONSES TO LIGHT AND SHADE IN A RAPIDLY RESPONSIVE TRANSCRIPTIONAL NETWORK IN ARABIDOPSIS

  • Leivar, Pablo
  • Tepperman, James
  • Cohn, Megan M.
  • Monte, Elena
  • Al-Sady, Bassem
  • Erickson, Erika
  • Quail, Peter H.
Plants respond to shade-modulated light-signals, via the phytochrome (phy) system, by adaptive changes, collectively termed the shade avoidance syndrome (SAS). To examine the roles of the Phy-Interacting bHLH Factors, PIF1, 3, 4 and 5, in relaying this information to the transcriptional network, we compared the genome-wide expression profiles of wild-type and quadruple pif (pifq) mutants in response to shade. The data identify a subset of genes, enriched in transcription-factor-encoding loci, that respond rapidly (within 1 h), in a PIF-dependent manner, to the shade signal, and that contain promoter-located G-box-sequence motifs (CACGTG), known to be preferred PIF binding sites. These genes are thus potential direct targets of phy-PIF signaling that function in the primary transcriptional circuitry controlling downstream response-elaboration. A second subset of PIF-dependent, early-response genes, lacking G-box motifs, are enriched for auxin-responsive loci, suggestive of being indirect targets of phy-PIF signaling involved in the rapid cell-expansion known to be induced by shade. A meta-analysis comparing deetiolation- and shade-responsive transcriptomes identifies a further subset of G-box-containing genes that reciprocally display rapid repression and induction in response to light and shade signals at the inception of deetiolation and shade-avoidance, respectively. Collectively, these data define a core set of transcriptional and hormonal (auxin, cytokinin) processes that appear to be dynamically poised to react rapidly to changes in the light environment via perturbations in the mutually antagonistic actions of the phys and PIFs. Data from comparative analysis of the quadruple pifq and all triple pif-mutant combinations in response to light and shade, confirm that the PIF-quartet members act with overlapping redundancy on seedling morphogenesis and transcriptional regulation, but that the individual PIFs contribute differentially to these responses., Peer reviewed

Proyecto: //
DOI: http://hdl.handle.net/10261/269511
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269511
HANDLE: http://hdl.handle.net/10261/269511
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269511
PMID: http://hdl.handle.net/10261/269511
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269511
Ver en: http://hdl.handle.net/10261/269511
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269511

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269565
Dataset

RADAR_ON_RAIA GPRS DRIFTING BUOYS, ATLANTIC OCEAN - RÍA DE VIGO (NW IBERIA) - SEP. 2021 - SEP. 2021

  • Martínez Fernández, Adrián
  • Gilcoto, Miguel
  • Redondo, W.
  • Villacieros-Robineau, Nicolás
This item is made of 2 files: the dataset in netcdf format, a Readme.txt file including a small description of the computed variables, and 3 figures representing the buoy and the two experiments. Dataset contributed to the Project RADAR ON RAIA (0461_RADAR ON RAIA_1_E).-- Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0), readme files for more detail information, GPS fixes of the drifts of manufactured buoys (GPRS) under Radar On Raia Project. These bouys were used in two short experiments (< 1 day) in September 2021 in order to validate the data collected by the HF Radar of RAIA_Vigo system. http://radaronraia.eu/, Funding for this study was provided by the European Union through EP-INTERREG V-A España-Portugal (POCTEP) program (RADAR ON RAIA, 0461_RADAR ON RAIA_1_E), No

Proyecto: //
DOI: http://hdl.handle.net/10261/269565, https://doi.org/10.20350/digitalCSIC/14639
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269565
HANDLE: http://hdl.handle.net/10261/269565, https://doi.org/10.20350/digitalCSIC/14639
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269565
PMID: http://hdl.handle.net/10261/269565, https://doi.org/10.20350/digitalCSIC/14639
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269565
Ver en: http://hdl.handle.net/10261/269565, https://doi.org/10.20350/digitalCSIC/14639
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269565

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269569
Dataset

RADAR_ON_RAIA SPOT DRIFTING BUOYS, ATLANTIC OCEAN (NW IBERIA) - SEP. 2020 - AUG. 2021

  • Martínez Fernández, Adrián
  • Gilcoto, Miguel
  • Redondo, W.
  • Villacieros-Robineau, Nicolás
This item is made of 2 files: the dataset in netcdf format, a Readme.txt file including a small description of the computed variables, and 4 figures representing the buoy and the three experiments. Dataset contributed to the Project RADAR ON RAIA (0461_RADAR ON RAIA_1_E).-- Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0), readme files for more detail information, GPS fixes of the drifts of manufracted buoys (SPOT) under Radar On Raia Project. This bouys were used in three experiments between Sep. 2020 and Aug. 2021 in order to validate the data collected by the HFR of RAIA_NW_Iberian system. http://radaronraia.eu, Funding for this study was provided by the European Union through EP-INTERREG V-A España-Portugal (POCTEP) program (RADAR ON RAIA, 0461_RADAR ON RAIA_1_E), No

Proyecto: //
DOI: http://hdl.handle.net/10261/269569, https://doi.org/10.20350/digitalCSIC/14640
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269569
HANDLE: http://hdl.handle.net/10261/269569, https://doi.org/10.20350/digitalCSIC/14640
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269569
PMID: http://hdl.handle.net/10261/269569, https://doi.org/10.20350/digitalCSIC/14640
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269569
Ver en: http://hdl.handle.net/10261/269569, https://doi.org/10.20350/digitalCSIC/14640
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269569

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269613
Dataset

DATA FROM: GENOME DATA FROM A 16TH CENTURY PIG ILLUMINATE MODERN BREED RELATIONSHIPS

  • Pérez-Enciso, Miguel
Ancient DNA (aDNA) provides direct evidence of historical events that have modeled the genome of modern individuals. In livestock, resolving the differences between the effects of initial domestication and of subsequent modern breeding is not straight forward without aDNA data. Here, we have obtained shotgun genome sequence data from a sixteenth century pig from Northeastern Spain (Montsoriu castle), the ancient pig was obtained from an extremely well-preserved and diverse assemblage. In addition, we provide the sequence of three new modern genomes from an Iberian pig, Spanish wild boar and a Guatemalan Creole pig. Comparison with both mitochondrial and autosomal genome data shows that the ancient pig is closely related to extant Iberian pigs and to European wild boar. Although the ancient sample was clearly domestic, admixture with wild boar also occurred, according to the D-statistics. The close relationship between Iberian, European wild boar and the ancient pig confirms that Asian introgression in modern Iberian pigs has not existed or has been negligible. In contrast, the Guatemalan Creole pig clusters apart from the Iberian pig genome, likely due to introgression from international breeds., Peer reviewed

Proyecto: //
DOI: http://hdl.handle.net/10261/269613
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269613
HANDLE: http://hdl.handle.net/10261/269613
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269613
PMID: http://hdl.handle.net/10261/269613
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269613
Ver en: http://hdl.handle.net/10261/269613
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269613

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269729
Dataset

A COMPREHENSIVE PHYLOGENOMIC PLATFORM FOR EXPLORING THE ANGIOSPERM TREE OF LIFE

  • Baker, William J.
  • Bailey, Paul
  • Barber, Vanessa
  • Barker, Abigail
  • Bellot, Sidonie
  • Bishop, David
  • Botigue, Laura
  • Brewer, Grace
  • Carruthers, Tom
  • Clarkson, James
  • Cook, Jeffrey
  • Cowan, Robyn
  • Dodsworth, Steven
  • Epitawalage, Niroshini
  • Françoso, Elaine
  • Gallego, Berta
  • Johnson, Matthew
  • Kim, Jan
  • Leempoel, Kevin
  • Maurin, Olivier
  • McGinnie, Catherine
  • Pokorny, Lisa
  • Roy, Shyamali
  • Stone, Malcolm
  • Toledo, Eduardo
  • Wickett, Norman
  • Zuntini, Alexandre
  • Eiserhardt, Wolf
  • Kersey, Paul
  • Leitch, Ilia
  • Forest, Félix
Software https://treeoflife.kew.org https://github.com/RBGKew/KewTreeOfLife, The tree of life is the fundamental biological roadmap for navigating the evolution and properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering plants) are fraught with data gaps, despite their critical role in sustaining terrestrial life. Today, high-throughput sequencing promises to significantly deepen our understanding of evolutionary relationships. Here, we describe a comprehensive phylogenomic platform for exploring the angiosperm tree of life, comprising a set of open tools and data based on the 353 nuclear genes targeted by the universal Angiosperms353 sequence capture probes. The primary goals of this paper are to (i) document our methods, (ii) describe our first data release and (iii) present a novel open data portal, the Kew Tree of Life Explorer (https://treeoflife.kew.org). We aim to generate novel target sequence capture data for all genera of flowering plants, exploiting natural history collections such as herbarium specimens, and augment it with mined public data. Our first data release, described here, is the most extensive nuclear phylogenomic dataset for angiosperms to date, comprising 3,099 samples validated by DNA barcode and phylogenetic tests, representing all 64 orders, 404 families (96%) and 2,333 genera (17%). A “first pass” angiosperm tree of life was inferred from the data, which totalled 824,878 sequences, 489,086,049 base pairs, and 532,260 alignment columns, for interactive presentation in the Kew Tree of Life Explorer. This species tree was generated using methods that were rigorous, yet tractable at our scale of operation. Despite limitations pertaining to taxon and gene sampling, gene recovery, models of sequence evolution and paralogy, the tree strongly supports existing taxonomy, while challenging numerous hypothesized relationships among orders and placing many genera for the first time. The validated dataset, species tree and all intermediates are openly accessible via the Kew Tree of Life Explorer and will be updated as further data become available. This major milestone towards a complete tree of life for all flowering plant species opens doors to a highly integrated future for angiosperm phylogenomics through the systematic sequencing of standardised nuclear markers. Our approach has the potential to serve as a much-needed bridge between the growing movement to sequence the genomes of all life on Earth and the vast phylogenomic potential of the world’s natural history collections., Calleva Foundation. Sackler Trust. Garfield Weston Foundation, Peer reviewed

Proyecto: //
DOI: http://hdl.handle.net/10261/269729
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269729
HANDLE: http://hdl.handle.net/10261/269729
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269729
PMID: http://hdl.handle.net/10261/269729
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269729
Ver en: http://hdl.handle.net/10261/269729
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269729

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269731
Dataset

GENOMIC PATTERNS OF HOMOZYGOSITY AND INBREEDING DEPRESSION IN MURCIANO-GRANADINA GOATS

  • Luigi-Sierra, Maria Gracia
Genotypic data from 1,040 Murciano-Granadina female goats genotyped with the Goat SNP50 BeadChip, as well as milk production records of 817 Murciano-Granadina goats for the traits milk yield measured in kilograms at 210 days (MY210), 240 days (MY240) and 305 days (MY305), the natural logarithm of the somatic cell count divided by 1,000 (lnSCC, to convert this value into a somatic cell count please use the formula: elnSCC × 103 cells/mL), fat percentage (FP), protein percentage (PP) and lactose percentage (LP)., Peer reviewed

Proyecto: //
DOI: http://hdl.handle.net/10261/269731
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269731
HANDLE: http://hdl.handle.net/10261/269731
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269731
PMID: http://hdl.handle.net/10261/269731
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269731
Ver en: http://hdl.handle.net/10261/269731
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/269731

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