BUSCADOR RECOLECTA

[Description of methods used for collection/generation of data] Camara traps., [Relationship between files, if important] Each file is a sequence of photos captured by camera tramps., Peer reviewed

Peer reviewed

TEM image and histograms of bare gold nanorods, UV–vis–NIR spectra of AuNRs–cellulose composites, TGA analysis results, EDS elemental maps, XPS analysis results, effect of pH on the photoregeneration of NADH, UV–vis spectra of the samples during investigations of the mechanism of cellulose-assisted photocatalysis, UV–vis spectra of the photocatalyst after each recycling cycle, and UV–vis spectra of all of the control experiments., Peer reviewed

[Methods] The study was carried out on eight inselbergs (steep-sided granitic rock outcrops) of ca. 1 ha on Mahé, the largest granitic island of the Seychelles archipelago, Indian Ocean (- 4.6953°, 55.4999°, 154 km2, 900 m a.s.l.). To restore inselberg communities, all non-native woody plants were removed from four of the inselbergs between 2011 and 2012 by cutting individual plants and applying herbicide to cut stumps (Kaiser-Bunbury et al., 2015), with follow-up control thereafter. The other four inselbergs remained unchanged with both native and non-native species (Kaiser-Bunbury et al., 2017). To estimate fruit availability at each site, we recorded monthly fruit abundance by counting all ripe fruits of woody fleshy-fruited plant species that are mainly dispersed by endozoochory along fixed linear transects. To collect seed predators, we sampled fleshy fruits monthly at the eight study sites over one year (Sep. 2018 to Aug. 2019). Samples of ten fruits were collected opportunistically from all individuals of fleshy-fruited species with >10 fruits at each site. For further information, please see the "Material and methods" section in the associated manuscript, When non-native species invade ecosystems, coevolved plant-animal interactions and associated ecological functions are altered, often to the detriment of local biodiversity. While mutualistic interactions can benefit from —and assist with— ecological restoration through the removal of non-native species, community-level changes in antagonistic interactions due to restoration are less well understood. Insect seed predators provide important ecosystem functions, but can also have antagonistic effects through pre-dispersal seed predation which can cause fruit abortion or premature fruit drop, potentially affecting plant community composition. Here, we used a network approach and data on trophic interactions from a large-scale field experiment to investigate the differences in insect seed predator communities between native restored sites (where non-native plants were removed) and unrestored sites dominated by non-native plants on the island of Mahé, Seychelles. Restored sites contained more individuals and species of seed predators (up by 81% and 50% respectively), and experienced a greater predation intensity (1.06 ± 0.53 vs. 0.27 ± 0.09), and predator specialisation compared to unrestored sites. The proportion of predated samples was similar between treatments (~14%). Beta diversity, measured as species and interaction turnover, increased at restored sites. Synthesis and applications: Our findings imply that vegetation restoration generates marked biodiversity benefits on native seed predator communities and their interactions. However, removing non-native plants did not result in the elimination of non-native seed predators, which might require targeted control measures. Our results highlight the importance of considering the effects of restoration on antagonistic interactions, in addition to those reported for pollination and seed dispersal services. Management practices should aim to control plant invasions for the conservation of native plant communities that serve as resources and refugia both for mutualists (e.g. seed dispersers, pollinators) and native insect seed-predator antagonists, both of which benefit native ecosystem function., German Research Foundation (DFG): KA 3349/2-2. Portuguese Foundation for Science and Technology: 10.54499/UIDB/04004/2020., Peer reviewed

Experimental details, control experiments, and additional microscopy images, including Figures S1–S22 and Tables S1–S3., Peer reviewed

Additional experimental sections (material characterizations and electrochemical measurements); SEM, TEM, and EDS mappings; BET; contact angle; XRD patterns; Raman spectrum; XPS spectra; UV–vis spectrum; Li2S nucleation; CV; charge and discharge curves; Coulombic efficiency; cycling performance; performance comparison; EIS fitting; sample and computational details in the experiments; and electrochemical properties of porous carbon employed as hosts in LSBs., Peer reviewed

Detailed experimental section and characterization including PXRD diffractograms, 1H NMR spectra, MALDI-ToF data, FESEM images, EDX elemental maps, XPS spectra, 13C CP-MAS solid-state NMR spectrum, N2 isotherm, and UV–vis spectrum., Peer reviewed

This data repository contains the full-resolution scanning electron microscopy (SEM-EDX, SEM-BSE and SEM-EBSD) data of (A) the starting material and (B) the post-experiment analysis, of the article: Menzel, Manuel D.; Eberhard, Lisa; Arias, Austin; Padrón-Navarta, José Alberto; Plümper, Oliver; 2025. Controls of focused fluid release in subduction zones: insights from experimental dehydration of brucite vein networks in serpentinite (in review in Contributions to Mineralogy and Petrology)., The collection of data included in this repository was funded by RUSTED projects PID2022-136471NB-C21 & PID2022-136471NB-C22 funded by the Agencia Estatal de Investigación (MCIN/AEI/10.13039/501100011033), Spain, co-financed by the European Union ERDF – a way of making Europe. The authors further acknowledge: EXCITE Network Transnational Access TNA-C3-2023-13 under European Union’s Horizon 2020 grant agreement No 101005611 & Horizon Europe grant agreement No 101131765 (L.E.; M.D.M). M.D.M acknowledges a postdoctoral fellowship (Postdoc_21_00791) funded by the Junta de Andalucía (Consejeria de Conocimiento y Universidades) and cofunded by ERDF. J.A.P-N. acknowledges additional support from the Junta de Andalucía through the ProyExcel 00757 research project. L.E., A.A. and O.P. acknowledge funding by the Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO), grant VI.Vidi.193.030, the Netherlands., Peer reviewed

[Description of methods used for collection/generation of data] D1: Images acquired on a 7-T scanner (Bruker, BioSpec 70/30, Ettlingen, Germany) using a T2-weighted RARE (Rapid Acquisition with Relaxation Enhancement) sequence. D2: Images acquired on a 7-T scanner (Bruker, BioSpec 70/30, Ettlingen, Germany) equipped with an actively shielded gradient system using a T2-weighted sequence. D3: Images acquired on a 11.4-T MRI scanner (Bruker BioSpec USR 117/16, Ettlingen, Germany) using a T2-weighted RARE sequence., [Methods for processing the data] Panadero Soler, Daniel; Kotb Selim, Mohamed; Martínez-Tazo, Patricia; Muñoz-Moreno, Emma; Ramos-Cabrer, Pedro; López-Larrubia, Pilar; De Santis, Silvia; Canals, Santiago; Pertusa, Antonio; 2025; SAMson: an automated brain extraction tool for rodents using SAM [Dataset]; BioRxiv; https://doi.org/10.1101/2024.03.07.583982, S.C. acknowledges support from PCI2024-153491 funded by MICIU /AEI /10.130 39/501100011033 and UE, PID2021-128158NB-C21 funded by MICIU/10.13039/ 50110 0011033 and FEDER, UE, CEX2021-001165-S funded by MICIU/AEI /10.13039/50110 0011033 and Excellence Grant CIPROM/2022/15 and INVESTIGO INVEST/2022/396 funded by the Generalitat Valenciana and Next Generation EU. S.D.S. was supported by the the Spanish Ministerio de Ciencia e Innovación, Agencia Estatal de Investigación (PID2021-128909NA-I00 and CNS2023-14488 ), by the Programs for Centres of Excellence in R\&D Severo Ochoa (CEX2021-001165-S), and by the Generalitat Valenciana through a Subvencion para la contratación de investigadoras e investigadores doctores de excelencia 2021 (CIDEGENT/2021/015) and by a Fundación Pasqual Maragall Research Programme (2024 call). P.L-L. was funded by grant PID2021-122528OB-I00 funded by MICIU/AEI/10.13039/501100011033/FEDER, UE. Some of the mice used in this study were generated in the project funded by MCIU/AEI/FEDER, UE grants PID2022-141700OB-I00, MCIN/AEI/10.13039/501100011033 and CB/07/09/0034 Center for Networked Biomedical Research on Mental Health (CIBERSAM, Bortolozzi A). In addition, the funding sources acknowledged in: 1) Mateu-Bosch A, Segur-Bailach E, Muñoz-Moreno E, Barallobre MJ, Arbonés ML, Gea-Sorlí S, et al. Systemic delivery of AAV-GCDH ameliorates HLDinduced phenotype in a glutaric aciduria type I mouse model. Molecular Therapy - Methods & Clinical Development. 2024;32(3):101276. Available from: https://www.sciencedirect.com/science/article/pii/S2329050124000925. and 2) Haddad-Tóvolli R, Ramírez S, Muñoz-Moreno E, Milà-Guasch M, Miquel-Rio L, Pozo M, et al. Food craving-like episodes during pregnancy are mediated by accumbal dopaminergic circuits. Nature Metabolism. 2022 Apr;4(4):424-34. Available from: https://doi.org/10.1038/s42255-022-00557-1., With funding from the Spanish government through the "Severo Ochoa Centre of Excellence" accreditation (CEX2021-001165-S)., Peer reviewed

The archive consists of three files: gaingrn_data.tgz Contains the underlying data and object structures for the GAIN-GRN creation process and the python package availabe in https://github.com/FloSeu/GAIN-GRN. This can be downloaded manually and extracted in the respective GAIN-GRN/ directory or automatically retrieved via a dedicated function agpcr_gains.tgz Contains the best (rank 1) PDB model of the ColabFold/AlphaFold2 workflow for each adhesion GPCR GAIN domain, named by its UniProt accession number. pkd_gains.tgz Contains the best (rank 1) PDB model of the ColabFold/AlphaFold2 workflow for each polycystic kidney disease (PKD1) / PKD1-like 1 protein (PKD1L1) GAIN domain, named by its UniProt accession number., The dataset corresponding to the publication: Generic residue numbering of the GAIN domain of adhesion GPCRs Florian Seufert, Guillermo Pérez-Hernández, Gáspár Pándy-Szekeres, Ramon Guixà-González, Tobias Langenhan, David E. Gloriam, Peter W. Hildebrand ReasearchSquare https://doi.org/10.21203/rs.3.rs-4761600/v1, Peer reviewed