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Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/171767
Dataset. 2018

REVEALING PROXIMATE CAUSES OF DWARFISM OF THE NATTERJACK TOAD (EPIDALEA CALAMITA) IN SOUTHERN SPAIN

  • Hyeun-Ji, Lee
  • Broggi, Juli
  • Sánchez-Montes, Gregorio
  • Díaz-Paniagua, Carmen
  • Gómez-Mestre, Iván
Climatic data was obtained from Worldclim Version 1&2, soil data from the European Soil Database, and Normalized Difference Vegetation Indices (NDVI) from satellite images through the Modis Vegetation index MOD13Q1. For skeletochronology, telomere, and microsatellite analyses we collected a total of 180 Epidalea calamita adult males across all populations. We then clipped the fourth toe of the right hindlimb that we then used for cross sectioning and DNA extractions. Stable isotope data were obtained from E. calamita egg clutches, which allows direct assessment of the diet of the female without harming any adults. We collected small sections of egg clutches that were kept under identical conditions in the lab until hatching and then determined the carbon and nitrogen levels of these samples. Standard metabolic rate was assessed in a terrestrial respirometer overnight, for which we brought in mature males from the field at night. Advertisement calls were recorded using a shotgun microphone and subsequently analysed using the software Raven Pro v.1.4. For female behavioural assays we brought in receptive females at night to the lab and played back recorded calls. All individuals were released at dawn and no individual was harmed., This dataset consists of a single excel file split into distinct sheets for different types of data: climate, population genetics, stable isotopes, standard metabolic rate, skeletochronology, telomere length, male advertisement calls, and female preference tests. The climatic data is split into sheets for NDVI, Worldclim Bio19, and edaphology. The population genetics data is split into sheets for basic statistics, genetic differentiation indicators, isolation by distance, and effective population size., Plan Nacional (grant CGL2014-59206-P), No

DOI: http://hdl.handle.net/10261/171767
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/171767
HANDLE: http://hdl.handle.net/10261/171767
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/171767
PMID: http://hdl.handle.net/10261/171767
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/171767
Ver en: http://hdl.handle.net/10261/171767
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/171767

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/171874
Dataset. 2018

PAH ATMOSPHERIC DEPOSITION IN HIGH MOUNTAIN LAKES

  • Arellano, Lourdes
  • Fernández, Pilar
  • Camarero, Lluís
  • Catalán, Jordi
  • Grimalt, Joan O.
Polycyclic aromatic hydrocarbons (PAHs) were analyzed in bulk atmospheric deposition samples collected at four European high mountain areas, Gossenköllesee (Tyrolean Alps), Redon (Central Pyrenees), Skalnate Pleso (High Tatra Mountains) and Lochnagar (Grampian Mountains) between 2004 and 2006. Sample collection was performed monthly in the first three sites and biweekly in Lochnagar. The number of sites, period of study and sampling frequency provide the most comprehensive description of PAH fallout in high mountain areas addressed so far. The average PAH deposition fluxes in Gossenköllesee, Redon and Lochnagar ranged between 0.8–2.1µgm−2mo−1, and in Skalnate Pleso it was 9.7µgm−2mo−1, showing the influence of substantial inputs from regional emission sources. The deposited distributions of PAH were dominated by parent phenanthrene, fluoranthene and pyrene, representing 32–60% of total. The proportion of phenanthrene, the most abundant compound, was higher at the sites of lower temperature, Gossenköllesee and Skalnate Pleso, showing higher transfer from gas phase to particles of the more volatile PAHs. The sites with lower insolation, e.g. those located at lower altitude, were those with higher proportion of photooxidable compounds such as benz[a]anthracene. According to the data analysed, precipitation is the main driver of PAH fallout. However, when rain and snow deposition were low, particle settling also constitutes an efficient driver for PAH deposition. Redon and Lochnagar were the two sites receiving highest rain and snow and the fallout of PAH fluxes was related to this precipitation. No significant association was observed between long-range backward air trajectories and PAH deposition in Lochnagar, but in Redon PAH fallout at higher precipitation was essentially related with air masses originating from the North Atlantic, which were dominant between November and May (cold season). In these cases, particle normalized PAH fallout was also associated to higher precipitation as these air masses were concurrent with lower temperatures, which enhanced gas to particle partitioning transfer. In the warm season (June–October), most of the air masses arriving to Redon originated from the south and particle deposition was enhanced as consequence of Saharan inputs. In these cases, particle settling was also a driver of PAH deposition despite the low overall PAH content of the Saharan particles. In Gossenköllesee, the site receiving lowest precipitation, PAH fallout was also related to particle deposition. The particle normalized PAH fluxes were significantly negatively correlated to temperature, e.g. for air masses originating from Central/Eastern Europe, showing a dominant transfer from gas phase to particles at lower temperatures, which enhanced PAH fallout, mainly of the most volatile hydrocarbons. Comparison of PAH atmospheric deposition and lacustrine sedimentary fluxes showed much higher values in the latter case, 24–100µgm−2yr−1 vs. 120–3000µgm−2yr−1, respectively. A strong significant correlation was observed between these two fluxes which is consistent with a dominant origin related with atmospheric deposition at each site., Peer reviewed

Proyecto: //
DOI: http://hdl.handle.net/10261/171874
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/171874
HANDLE: http://hdl.handle.net/10261/171874
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/171874
PMID: http://hdl.handle.net/10261/171874
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/171874
Ver en: http://hdl.handle.net/10261/171874
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/171874

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/171888
Dataset. 2018

PAH ATMOSPHERIC DEPOSITION IN HIGH MOUNTAIN LAKES

  • Arellano, Lourdes
  • Fernández, Pilar
  • van Drooge, Barend L.
  • Rose, Neil L.
  • Nickus, Ulrike
  • Thies, Hansjoerg
  • Stuchlík, Evzen
  • Camarero, Lluís
  • Catalán, Jordi
  • Grimalt, Joan O.
This dataset is related to the paper "Drivers of atmospheric deposition of polycyclic aromatic hydrocarbons at European high-altitude sites" by Arellano et al. , Atmospheric Chemistry and Physics, 2018, Polycyclic aromatic hydrocarbons (PAHs) were analyzed in bulk atmospheric deposition samples collected at four European high mountain areas, Gossenköllesee (Tyrolean Alps), Redon (Central Pyrenees), Skalnate Pleso (High Tatra Mountains) and Lochnagar (Grampian Mountains) between 2004 and 2006. Sample collection was performed monthly in the first three sites and biweekly in Lochnagar. The number of sites, period of study and sampling frequency provide the most comprehensive description of PAH fallout in high mountain areas addressed so far. The average PAH deposition fluxes in Gossenköllesee, Redon and Lochnagar ranged between 0.8–2.1µgm−2mo−1, and in Skalnate Pleso it was 9.7µgm−2mo−1, showing the influence of substantial inputs from regional emission sources. The deposited distributions of PAH were dominated by parent phenanthrene, fluoranthene and pyrene, representing 32–60% of total. The proportion of phenanthrene, the most abundant compound, was higher at the sites of lower temperature, Gossenköllesee and Skalnate Pleso, showing higher transfer from gas phase to particles of the more volatile PAHs. The sites with lower insolation, e.g. those located at lower altitude, were those with higher proportion of photooxidable compounds such as benz[a]anthracene. According to the data analysed, precipitation is the main driver of PAH fallout. However, when rain and snow deposition were low, particle settling also constitutes an efficient driver for PAH deposition. Redon and Lochnagar were the two sites receiving highest rain and snow and the fallout of PAH fluxes was related to this precipitation. No significant association was observed between long-range backward air trajectories and PAH deposition in Lochnagar, but in Redon PAH fallout at higher precipitation was essentially related with air masses originating from the North Atlantic, which were dominant between November and May (cold season). In these cases, particle normalized PAH fallout was also associated to higher precipitation as these air masses were concurrent with lower temperatures, which enhanced gas to particle partitioning transfer. In the warm season (June–October), most of the air masses arriving to Redon originated from the south and particle deposition was enhanced as consequence of Saharan inputs. In these cases, particle settling was also a driver of PAH deposition despite the low overall PAH content of the Saharan particles. In Gossenköllesee, the site receiving lowest precipitation, PAH fallout was also related to particle deposition. The particle normalized PAH fluxes were significantly negatively correlated to temperature, e.g. for air masses originating from Central/Eastern Europe, showing a dominant transfer from gas phase to particles at lower temperatures, which enhanced PAH fallout, mainly of the most volatile hydrocarbons. Comparison of PAH atmospheric deposition and lacustrine sedimentary fluxes showed much higher values in the latter case, 24–100µgm−2yr−1 vs. 120–3000µgm−2yr−1, respectively. A strong significant correlation was observed between these two fluxes which is consistent with a dominant origin related with atmospheric deposition at each site., Peer reviewed

Proyecto: //
DOI: http://hdl.handle.net/10261/171888
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/171888
HANDLE: http://hdl.handle.net/10261/171888
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/171888
PMID: http://hdl.handle.net/10261/171888
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/171888
Ver en: http://hdl.handle.net/10261/171888
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/171888

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172425
Dataset. 2018

INFORMED RECRUITMENT OR THE IMPORTANCE OF TAKING STOCK

  • Genovart, Meritxell
  • Oro, Daniel
Peer reviewed

Proyecto: //
DOI: http://hdl.handle.net/10261/172425
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172425
HANDLE: http://hdl.handle.net/10261/172425
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172425
PMID: http://hdl.handle.net/10261/172425
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172425
Ver en: http://hdl.handle.net/10261/172425
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172425

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172783
Dataset. 2018

DATASET OF THE PUBLICATION "MYELINATED AXONS AND FUNCTIONAL BLOOD VESSELS POPULATE MECHANICALLY COMPLIANT RGO FOAMS IN CHRONIC CERVICAL HEMISECTED RATS"

  • Domínguez-Bajo, Ana
  • González-Mayorga, Ankor
  • Guerrero, Carlos R.
  • Palomares, F. Javier
  • García García, Ricardo
  • López-Dolado, Elisa
  • Serrano, María C.
The copyright of the content of this dataset belongs to the authors of the article indicated above. Permission must be requested to the authors for the reproduction and/or use of any parts of this dataset. Access to this dataset has been made public through the use of the public repository of CSIC (DIGITAL.CSIC). For any further questions, please contact the corresponding author of the article at mc.terradas@csic.es, Spinal cord injury (SCI) remain a therapeutic challenge. In this work, we have explored the regenerative ability of reduced graphene oxide (rGO) scaffolds to support pivotal features of neural repair at 4 months after SCI. 3D randomly porous foams have been prepared in mechanical compliance with neural cells and tissues. After 4 months, these scaffolds are fully vascularized and populated with neurites, some of them identified as myelinated excitatory axons. Magnetic resonance imaging studies demonstrate reduce perilesional damage in the presence of the scaffolds. In summary, these 3D porous rGO scaffolds are able to induce a compilation of positive effects that have been rarely described before, if ever, for any other material implanted in the injured spinal cord. The techniques used in this study include: immunofluorescence, scanning electron microscopy, atomic force microscopy, transmission electron microscopy, confocal laser scanning microscopy, histology, behavioral tests, magnetic resonance imaging, and X-ray photoelectron spectroscopy., This work was supported by the Ministerio de Economía y Competitividad and the Fondo Europeo de Desarrollo Regional (MAT2016-78857-R, MAT2016-76507-R and MAT2016-80394-R, MINECO/FEDER, UE) and the European Research Council ERC-AdG-340177 (3DNanoMech)., Peer reviewed

DOI: http://hdl.handle.net/10261/172783
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172783
HANDLE: http://hdl.handle.net/10261/172783
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172783
PMID: http://hdl.handle.net/10261/172783
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172783
Ver en: http://hdl.handle.net/10261/172783
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172783

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172794
Dataset. 2019

DATA ON PHENOTYPE-DEPENDENT DISPERSAL IN PIED FLYCATCHERS BETWEEN 1988 AND 2016

  • Camacho, Carlos
  • Martínez-Padilla, Jesús
  • Canal, David
  • Potti, Jaime
Between 1988 and 2016, we investigated the effects of breeding density and body size on natal dispersal propensity in a pied flycatcher (Ficedula hypoleuca) population breeding in nest-boxes in two different habitats in central Spain (41°04'N, 3°27'W − 40°40'N, 4°80'W). Body size was measured as tarsus length. Breeding density was estimated as the annual number of nest-boxes occupied by pied flycatchers relative to the total area of each forest patch. Dispersal rates between habitats were also calculated by dividing the number of recruits that moved from their natal to the alternative habitat patch by the total number of recruits that returned to the study area each year. In addition, we calculated the annual rates of immigration to each habitat, expressed as the number of unbanded birds relative to the total number of birds in a given year., Peer reviewed

Proyecto: //
DOI: http://hdl.handle.net/10261/172794
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172794
HANDLE: http://hdl.handle.net/10261/172794
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172794
PMID: http://hdl.handle.net/10261/172794
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172794
Ver en: http://hdl.handle.net/10261/172794
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172794

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172859
Dataset. 2018

GENOME-WIDE-ASSOCIATION STUDIES (GWAS) IN BARLEY [DATASET]

  • Igartua Arregui, Ernesto
  • Pérez Cantalapiedra, Carlos
  • Casas Cendoya, Ana María
The dataset contains 1) bibliographic data from all published literature on genetic association (GWAS) in barley; 2) methodological data on procedures of analysis, traits analyzed, size of genotypic and molecular marker panels; 3) marker and trait information, including genome position (physical and genetic), extracted by the authors from the articles and from the barley reference genome sequence. The set of 144 articles were downloaded from the Web of Science and Scopus databases using appropriate keywords, and selected after inspection by the authors., © The Authors. Creative Commons License Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)., Dataset summarizing procedures and main findings of all studies to date devoted to genome-wide association studies in barley., Funding from grant “Descubrimiento y aplicación de QTL, genes y caracteres para la mejora genética de la cebada. Mecanismos de adaptación al clima”. Funding agency: MINECO, AGL2016-80967-R, Plan Nacional I+D+I (Ciencias Agrarias). Ernesto Igartua Arregui – Ana Mª Casas Cendoya., Peer reviewed

DOI: http://hdl.handle.net/10261/172859
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172859
HANDLE: http://hdl.handle.net/10261/172859
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172859
PMID: http://hdl.handle.net/10261/172859
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172859
Ver en: http://hdl.handle.net/10261/172859
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/172859

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/173204
Dataset. 2018

METHANE EMISSIONS IN DOÑANA SALTMARSHES OVER 2016‐2018

  • Huertas, I. Emma
  • Paz, M. de la
This data set includes measurements of water samples collected from 7 sites during 16 surveys carried out between March 2016 and March 2018 in the salt marshes of Doñana National Park. Geographic coordinates of sampling positions are provided. During samplings, in situ water conductivity (converted to salinity), temperature and pH were measured using a multi‐probe (YSI‐6920V2, YSI Incorporated, Yellow Springs, Ohio, USA) and water samples were collected for laboratory analysis of dissolved methane and nitrous oxide by static‐head space equilibration gas chromatography (GC) using an Agilent 7890 GC equipped with Flame Ionization Detector (FID) for CH4, according to de la Paz et al. (2015). Samples were also taken for analysis of phosphate, nitrate, nitrite and ammonia (with a Skalar Sanˆ++215 Continuous Flow Analyzer and using the standard colorimetric techniques described in Hansen and Koroleff 1999), dissolved oxygen and total alkalinity (using a Metrohm 794 Titroprocessor following the methods described by Mintrop et al. (2000) and Winkler) and dissolved organic carbon and total dissolved nitrogen that were determined through by catalytic oxidation at high temperature (720 °C) and chemiluminescence, respectively in a Shimadzu Total Organic Carbon analyzer (Model TOC‐VCPH/CPN), according to Álvarez‐Salgado and Miller (1998). Dissolved carbon dioxide partial pressure was calculated from pHNBS and total alkalinity using co2sys.xls (Pierrot et al., 2000) with the dissociation constants for carbon and sulfate of (Cai and Wang 1998) and (Dickson 1990), respectively., Calculations of the equilibrium concentrations of methane and nitrous oxide in the water phase was done using the annual averaged atmospheric mixing ratios CH4 (xCH4atm) provided by the World Data Center for Greenhouse Gases (http://ds.data.jma.go.jp/gmd/wdcgg/). Such mean value during the sampling period was calculated as 1866 ppb., Daily measurements of rainfall (mm), air temperature (ºC) and wind speed (m s‐1) were provided by ameteorological station located in Lebrija (36º 58’ 35’‘N, 06º 07’ 34” W) managed by the Junta de Andalucia (www.juntadeandalucia.es/agriculturaypesca/ifapa/ria/servlet/FrontController). The data is provided as [space] delimitated plain text files within a compressed folder that also includes a single README file (in PDF format) containing a detailed description of the data structure., For more details, see the publication: I. Emma Huertas, Mercedes de la Paz, Fiz F. Perez, Gabriel Navarro and Susana Flecha 2019. Methane emissions from the salt marshes of Doñana wetlands: spatio‐temporal variability and controlling factors. Frontiers in Ecology and Evolution, section Conservation., This dataset is subject to a Creative Commons License Attribution‐ShareAlike 4.0 International., [General Notes] The data are provided under an Attribution‐ShareAlike 4.0 International license. However, if you use thedata, so as to support the authors, please consider citing the above mentioned article where data collection and analytical techniques are given in detail. Here we only give a brief details and a guide to the contents of the data files. Data files are in UTF8 encoding, plain text format with {space} used as the delimiter and text enclosed in "". All data files have column titles as the first line. NA is used to represent no data., [Geographical coordinates of water sampling sites] Doñana_saltmarshes_sampling_stations_geo_coordinates.csv provides the geographical coordinates of the sites. ST.ID represents the code (used to link to other data tables) for each site. long and lat are longitude and latitude, respectively. Geographic projection and WSG84 datum is used (EPSG:4326)., [Water physiochemical properties] Doñana_saltmarshes_water_monitoring_2016‐2018.csv provides data from approximately monthly water sampling data between March 2016 and March 2018. Temperature, salinity and pH were measured with a multi‐probe (YSI‐6920V2, YSI Incorporated, Yellow Springs, Ohio, USA). Total alkalinity, concentrations of oxygen, organic carbon, organic nitrogen, inorganic nitrogen, pigments, suspended solids and dissolved phosphate were measured in the laboratory. pCO2 was calculated using pH and total alkalinity with co2sys.xls. SAMP.EVENT is a convenience code used to denominate each individual survey. SAMP.DATE is the day in which the sampling took place (in the Gregorian calendar). time.stamp.gmt is the time (GMT or UTC) at which the sample was collected, in extended ISO8601 format. ST.ID represents the code (used to link to other data tables) for each site. T.degC is the water temperature in degrees Celsius. Salinity is the water salinity (practical salinity units, i.e., no units), calculated from conductivity. CH4.nmolL is methane concentration with units nano mol per liter. Chla.μmolL is chlorophyll‐a concentration with units micro mol per liter. TSM.mgL is total suspended solids concentration with units milli gram per liter. DOC.mgL is total dissolved organic carbon concentration with units milli gram per liter. TDN.mgL is total dissolved nitrogen concentration with units milligram per liter. NH4.μmolL is dissolved ammonium concentration with units micro mol per liter. NO2.μmolL is dissolved nitrite concentration with units micro mol per liter. NO3.μmolL is dissolved nitrate concentration with units micro mol per liter. PO4.μmolL is dissolved inorganic phosphate concentration (i.e., not organic or total) with units micro mol per liter. O2.mgL is dissolved oxygen concentration with units mili gram per liter.TA.umolKg is total alkalinity with units micro mol per kilogram. pH is given using the National Bureau of Standards (NBS) scale at in situ temperature., [Meteorological data] Daily measurements of air temperature (ºC), wind speed (m s‐1) and humidity were provided by a meteorological station located in Lebrija (36º 58’ 35’‘N, 06º 07’ 34” W) maintained by the Junta de Andalucia (www.juntadeandalucia.es/agriculturaypesca/ifapa/ria/servlet/FrontController). Doñana_saltmarshes_meteorological_data.csv contains monthly‐ensemble‐averaged wind velocities at 1 m (uz) above the land surface with units meters per second. T.degC is monthly mean air temperature at 1m above the land surface with units degrees Celcius. hum.% is the relative humidity at 1m above the land surface expressed as a percent., This data set includes recently published data used to assess the spatio‐temporal variability of dissolved methane in the salt marshes of Doñana National Park, SW Spain (Long:‐6.373, Lat:36.932, Datum:WSG84) between March 2016 and March 2018 and calculate CH4 air‐water fluxes., This research was supported by the project 1539/2015 (Spanish Ministry for Agriculture, Food and Environment). Meteorological data was provided by the Junta de Andalucia. NOOA supplied atmospheric methane data. Further analytical details, acknowledgements, and airwater fluxes can be found in the publication., No

Proyecto: //
DOI: http://hdl.handle.net/10261/173204
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/173204
HANDLE: http://hdl.handle.net/10261/173204
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/173204
PMID: http://hdl.handle.net/10261/173204
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/173204
Ver en: http://hdl.handle.net/10261/173204
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/173204

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/173252
Dataset. 2018

BASES DE DATOS ANALÍTICOS Y POSICIONALES DEL SITIO TÚNEL VII, ANALYTICAL AND COORDINATES DATA BASES OF TUNEL VII SITE

  • Vila-Mitjà, Assumpció
  • Estévez Escalera, Jordi
Bases de datos (en formato hoja de cálculo LibreOffice) con las coordenadas tridimensionales de las delimitaciones y retículos de profundidad de las subunidaders estratigráficas y con las descripciones analíticas de los restos de fauna y de industria lítica. Se incluyen también otros datos analíticos de los materiales., Bases de datos -LibreOffice- con analíticas y posicionales del sitio Túnel VII, Agencias financiadoras: CSIC, CONICET, Ministerio de Educación y Ciencia (España) y Ministerio de Cultura (España)., Peer reviewed

Proyecto: //
DOI: http://hdl.handle.net/10261/173252
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/173252
HANDLE: http://hdl.handle.net/10261/173252
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/173252
PMID: http://hdl.handle.net/10261/173252
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/173252
Ver en: http://hdl.handle.net/10261/173252
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/173252

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/173315
Dataset. 2018

STRESS RELATED TFBS PREDICTIONS IN DROSOPHILA MELANOGASTER AND HUMANS

  • Villanueva-Cañas, José Luis
  • Horváth, Vivien
  • Aguilera, Laura
  • González Pérez, Josefa
The dataset consists of the prediction of transcription factor binding sites (ChIP-seq data) and transcription factor binding motifs (Position weight matrices and Transcription factor flexible models) in Drosophila melanogaster and humans., Although transposable elements (TEs) are an important source of regulatory variation, their genome-wide contribution to the transcriptional regulation of stress response genes has not been studied yet. Stress is a major aspect of natural selection in the wild, leading to changes in the transcriptional regulation of a variety of genes that are often triggered by one or a few transcription factors. In this work, we take advantage of the wealth of information available for Drosophila melanogaster and humans to analyze the role of TEs in stress regulatory networks. We used in silico predictions and chromatin immunoprecipitation sequencing (ChIP-seq) data to localize transcription factor binding sites (TFBS) for several stress-response transcription factors involved in six stress regulatory networks: immune, hypoxia, oxidative, xenobiotic, heat shock, and heavymetal stress responses. The predictions at the DNA level were complemented with the analysis of biochemical and genomic features, such as chromatin characteristics and location regarding nearby genes. In addition, we also used population level information to identify a subset of TEs that were more likely to contain functional TFBS. For a representative subset of the most likely candidate TEs, we performed in vivo transgenic reporter assays in different stress conditions. Overall, our results showed that TEs are relevant contributors to the transcriptional regulation of stress response genes., This work was funded by the Ministerio de Economia y Competitividad BFU2014-57779-P, Ministerio de Ciencia, Innovación y Universidades/AEI (BFU2017-82937-P) and the European Commission (H2020-ERC-2014-CoG-647900)., Peer reviewed

DOI: http://hdl.handle.net/10261/173315
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/173315
HANDLE: http://hdl.handle.net/10261/173315
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/173315
PMID: http://hdl.handle.net/10261/173315
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/173315
Ver en: http://hdl.handle.net/10261/173315
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/173315

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