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If you download all files into a directory on your system and open the .Rmd file in Rstudio, you can knit to execute the code and regenerate all figures from the raw data files (also included), This is a summary of the workflow for carrying out diversity and structure analysis from Lucena-Perez et al. 2023. The starting point are bam files of Lynx pardinus and Lynx lynx data mapped to the Lynx pardinus genome. The following analyses are documented here: Generation of a PCA; Admixture analysis; Genomic diversity analysis, Peer reviewed

Data available here: Data : Geographic layers and Occurrences; R scripts and .csv files, Long-term studies depicting the multi-continental invasion trajectories of species are scarce, particularly for invertebrates. The red swamp crayfish, Procambarus clarkii, stands out as a hyper successful invasive species with a well-known invasion history at both regional and global levels. This allows for the utilization of its distributional data to analyse its bioclimatic niche over time., Peer reviewed

[ENG] The dataset is structured in a single Excel file with three sheets, each containing raw data of cumulative infiltration curves followed by gravity drainage. In each sheet, the first row labels the different infiltration curves. The infiltration curves are defined by pairs of columns, where the first column denotes time (in seconds) and the second column of each pair corresponds to the cumulative infiltration data (in centimeters). Each pair of columns represents a different material, distinguished by color-coded headings for clarity. The first sheet, labelled Synthetic Infiltration Curves, contains the infiltration curves followed by gravity drainage simulated with HYDRUS-1D on 5 cm high columns with different materials. These include homogeneous columns of sandy loam (SL) and loam (L) as well as columns with different soil configurations and geometries. For example, 1 cm SL-4 cm Si means a 1 cm layer of sandy loam over a 4 cm layer of silt (Si). The second sheet, entitled Laboratory Infiltration Curves, contains two cumulative infiltration curves measured in laboratory in two different columns of 5 cm high. The columns consisted of a 2.5 cm layer of sand on top of a 2.5 cm of sieved loam soil, and the reverse configuration. The third sheet, Undistub. cores inf. curves, shows the cumulative infiltration curves measured in undisturbed soil cores collected from forest soils coming from three different municipalities of Huesca-Spain., [ESP] El conjunto de datos está estructurado en un único archivo Excel con tres hojas, cada una de las cuales contiene datos brutos de curvas de infiltración acumulada seguidas de drenaje por gravedad. En cada hoja, la primera fila etiqueta el nombre de las diferentes curvas de infiltración. Las curvas de infiltración están definidas por pares de columnas, donde la primera columna denota el tiempo (en segundos) y la segunda columna de cada par corresponde a los datos de infiltración acumulada (en centímetros). Cada par de columnas representa un material distinto, que se distingue por un código de colores para mayor claridad. La primera hoja, etiquetada Synthetic Infiltration Curves, contiene las curvas de infiltración seguidas del drenaje por gravedad simulado con HYDRUS-1D en columnas de 5 cm de altura con diferentes materiales. Éstas incluyen columnas homogéneas de suelo franco arenoso (SL) y suelo franco (L), así como columnas con diferentes configuraciones y geometrías de suelo. Por ejemplo, 1 cm SL-4 cm Si significa una capa de 1 cm de suelo franco arenoso sobre una capa de 4 cm de limo (Si). La segunda hoja, titulada Laboratory Infiltration Curves, contiene dos curvas de infiltración acumulada medidas en laboratorio sobre dos columnas diferentes de 5 cm de altura. Las columnas consisten en una capa de 2,5 cm de arena sobre una capa de 2,5 cm de suelo franco tamizado, y la configuración inversa. La tercera hoja, Undistub. cores inf. curves, muestra las curvas de infiltración acumulada medidas en testigos de suelo inalterados recogidos de suelos forestales procedentes de tres municipios diferentes de Huesca-España., This dataset is covered by a Creative Commons Licence Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)., [ENG] The excel file includes a series of synthetic infiltration curves followed by gravity drainage simulated with HYDRUS-1D. These data correspond to infiltration curves generated in 5 cm high homogeneous columns of sandy loam (SL) and loam (L,) as well as, 5 cm high columns with different configurations of soils and geometries. For example, 1 cm SL-4 cm Si denotes a 1 cm layer of sandy loam overlying on a 4 cm layer of silt (Si). The file also includes infiltration curves followed by gravity drainage measured on laboratory columns consisting of 2.5 cm of sand placed on a 2.5 cm layer of sieved loam soil, and the opposite configuration. Finally, three infiltration curves measured in 5 cm columns of undisturbed soil are also included collected in forest soils., ESP] El archivo Excel incluye una serie de curvas de infiltración sintéticas seguidas de drenaje por gravedad simuladas con HYDRUS-1D. Estos datos corresponden a curvas de infiltración generadas en columnas homogéneas de 5 cm de altura con suelo franco arenoso (SL) y suelo franco (L), así como columnas de 5 cm de altura con diferentes configuraciones de suelo y geometrías. Por ejemplo, 1 cm SL-4 cm Si denota una capa de 1 cm de suelo franco arenoso sobre una capa de 4 cm de limo (Si). El archivo también incluye curvas de infiltración seguidas de drenaje por gravedad medidas en columnas de laboratorio compuestas por 2,5 cm de arena sobre 2,5 cm de suelo franco tamizado, y la configuración opuesta. Por último, también se incluyen tres curvas de infiltración medidas en columnas de 5 cm de suelo inalterado recogidas en suelos forestales., Proyecto RENURSE (TED2021-132406B-I00), financiado por el Ministerio de Ciencia e Innovación, Peer reviewed

A study was undertaken to assess the diversity in thermal biology of the bee assemblage that pollinates plants in a Mediterranean montane area of southeastern Spain, evaluate its taxonomic and phylogenetic underpinnings, and elucidate whether there existed seasonal, daily, between-habitat or floral visitation correlates of bee thermal biology which could contribute to partition ecological gradients among plant and bee species. Thermal biology parameters were obtained in the laboratory and the field on individual bees of a diverse sample comprising most bee pollinators of the regional plant community. Species-specific thermal biology parameters were combined with quantitative field data on bee pollinators and flower visitation for the regional community of entomophilous plants (Herrera 2023)., Peer reviewed

Zoonoses constitute a major risk to human health. Comprehensive assessments on the potential emergence of novel disease outbreaks are essential to ensure the effectiveness of sanitary controls and to establish mitigating actions. Through a continental-scale survey of rural human settlements conducted over 13 years in 15 Neotropical countries, we document the vast extent of poaching to meet the local demand for pets, resulting in thousands of families living with ca. 275 species of wild animals without any sanitary controls. Parrots account for ca. 80% of wild pets, dying mostly from diseases at a average age of one year. This culturally rooted tradition, which dates back to pre-Columbian times, may lead to health risks by bringing wild animals prone to carrying parasites and pathogens into close contact with humans and their exotic pets and livestock. Although animal pathogens and parasites have been transmitted to humans for centuries, the current trend of human population growth and connectivity can increase the risk of zoonotic outbreaks spreading at an unprecedented pace. Similarly, disease transmission from humans and poultry to wild animals is also expected to be facilitated via wild pets, leading to conservation problems. Several studies have highlighted the risk posed by wildlife city markets for cross-species disease transmission, ignoring the risk associated with widespread pet ownership of wild animals poached locally in rural areas. Given its geographic and social dimensions, a holistic approach is required to reduce this illegal activity as well as to strengthen health surveillance of seized individuals and people in close contact with poached pets, which would benefit both people and wildlife., Fundación Biodiversidad : MIMARM 52I.CA2109; Loro Parque Fundación : PP-146-2018-1 Plan Gent : CIDEGENT/2020/030, Peer reviewed

Dataset 1. - Abundance matrix (plot x species) used as input in the diversification analyses (1,312 sites; 141 species). Dataset 2. - Abundance matrix (plot x species) used as in the community analyses (199 sites; 98 species)., Peer reviewed

Peer reviewed

This is version is the one submitted for publication along Reilly et al. paper., Peer reviewed

Addtion of Maxime_Eeraerts_etal_Vacinnium_corymbosum_USA_2021.ods (2023-05-07), Peer reviewed

Figure S1. Sigmoidal fit model for gill area growth over time. Hindlimb’s femur’s length comparison. Figure S2. Growth curves and linear model of gills from all segments. Figure S3. Segment gills adjusted size comparison at the last instar stage. Figure S4. Molting number and duration in operated and unoperated (control) nymphs . Suppl. F5. Linear model of area over time and orthogonal views of DAPI stainings and EdU 24h incorporated in regenerating gills of 6-7 dpa. Suppl. F6. Cuticular structures of the gill as visualized using autofluorescene. Suppl. F7. Heatmap of common DEGs in regenerating gills with orthology in Drosophila melanogaster. Suppl. F8. Functional screening via knockdown on Drosophila wing regeneration. Suppl. F9. Summary of processes at stage 1 regenerating gills. Suppl. F10. Count file quality control for each of the libraries of the RNAseq experiment before and after normalization with DESeq2., Peer reviewed