Dataset.
Supplementary Material: A COMPASS for VESPUCCI: A FAIR way to explore the grapevine transcriptomic landscape
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/330864
Digital.CSIC. Repositorio Institucional del CSIC
- Moretto, Marco
- Sonego, Paolo
- Pilati, Stefania
- Matus, José Tomás
- Costantini, Laura
- Malacarne, Giulia
- Engelen, Kristof
1. Supplementary Data:
-Genes involved in pollen development
-Pectin Methyl-Esterases and biotic stress
-MYB14 transcription factor modulated genes
Supplementary table 1:
A selection of few example queries using GraphQL, pyCOMPASS and rCOMPASS
Supplementary Table 2:
Comparison table between VESPUCCI v1 and v2 main features
Supplementary Table 3:
Comparison table between several on-line resources for grapevine and other plant species.
Supplementary Figure 1. Bar Plot of VESPUCCI v1 sample distributions based on their condition annotation in Vitis vinifera (left) and non-vinifera (right) experiments. Samples are divided by tissues (X-axis) and their abundances in square root scale (Y-axis). In the left plot, different colors are used to denote untreated samples, biotic-treated samples and abiotic-treated samples. In the right plot, colors are used to differentiate between different Vitis species, subspecies and cross species. The great majority of samples (50%) come from Vitis vinifera untreated fruit samples taken at different developmental stages. Non-vinifera species and hybrids samples represent 7.5% of the dataset while 8.5% of the total are stress-related (1.4% being fruit) and 34% are Vitis vinifera untreated non-fruit samples., Peer reviewed
DOI: http://hdl.handle.net/10261/330864
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/330864
HANDLE: http://hdl.handle.net/10261/330864
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/330864
Ver en: http://hdl.handle.net/10261/330864
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/330864
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Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/330864
Dataset. 2022
SUPPLEMENTARY MATERIAL: A COMPASS FOR VESPUCCI: A FAIR WAY TO EXPLORE THE GRAPEVINE TRANSCRIPTOMIC LANDSCAPE
Digital.CSIC. Repositorio Institucional del CSIC
- Moretto, Marco
- Sonego, Paolo
- Pilati, Stefania
- Matus, José Tomás
- Costantini, Laura
- Malacarne, Giulia
- Engelen, Kristof
1. Supplementary Data:
-Genes involved in pollen development
-Pectin Methyl-Esterases and biotic stress
-MYB14 transcription factor modulated genes
Supplementary table 1:
A selection of few example queries using GraphQL, pyCOMPASS and rCOMPASS
Supplementary Table 2:
Comparison table between VESPUCCI v1 and v2 main features
Supplementary Table 3:
Comparison table between several on-line resources for grapevine and other plant species.
Supplementary Figure 1. Bar Plot of VESPUCCI v1 sample distributions based on their condition annotation in Vitis vinifera (left) and non-vinifera (right) experiments. Samples are divided by tissues (X-axis) and their abundances in square root scale (Y-axis). In the left plot, different colors are used to denote untreated samples, biotic-treated samples and abiotic-treated samples. In the right plot, colors are used to differentiate between different Vitis species, subspecies and cross species. The great majority of samples (50%) come from Vitis vinifera untreated fruit samples taken at different developmental stages. Non-vinifera species and hybrids samples represent 7.5% of the dataset while 8.5% of the total are stress-related (1.4% being fruit) and 34% are Vitis vinifera untreated non-fruit samples., Peer reviewed
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