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Set de datos (Dataset).

Pairwise syntenic dot plots between chromosomes of jellyfish (RES) and bilaterian species [Dataset]

DIGITAL.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/371745
DIGITAL.CSIC. Repositorio Institucional del CSIC
  • Lin, Che-Yi
  • Marlétaz, Ferdinand
  • Pérez-Posada, Alberto
  • Martínez-García, Pedro Manuel
  • Schloissnig, Siegfried
  • Peluso, Paul
  • Conception, Greg T.
  • Bump, Paul
  • Chen, Yi-Chih
  • Chou, Cindy
  • Lin, Ching-Yi
  • Fan, Tzu-Pei
  • Tsai, Chang-Tai
  • Gómez-Skarmeta, José Luis
  • Tena, Juan J.
  • Lowe, Christopher J.
  • Rank, David R.
  • Rokhsar, Daniel S.
  • Yu, Jr-Kai
  • Su, Yi-Hsien
The identified chromosomal rearrangement events in bilaterians are not found in the jellyfish genome. SPU3 was derived from DALG R, which dispersed into other chromosomes in chordates. Since SPU3 corresponds to RES19, the chordate dispersal event did not occur in the jellyfish (a). BFL3 and BFL16 correspond to different RES chromosomes, while their ALGs (DALGs B2 and C2) fused into ambulacraria AALG B2⊗C2. Thus, the ambulacrarian fusion event was not found in the jellyfish (b). Similarly, PYE1 and PYE17 both correspond to ambulacraria AALG B2⊗C2 and match to different RES chromosomes (c). The 4 shared fusion events in spiralians were not found in the jellyfish genome, as sea urchin chromosomes corresponding to fused spiralian chromosomes match to different jellyfish chromosomes (indicated by columns of the same color) (d). The data underlying this figure can be found in S1 Data., Peer reviewed
 
DOI: http://hdl.handle.net/10261/371745
DIGITAL.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/371745

HANDLE: http://hdl.handle.net/10261/371745
DIGITAL.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/371745
 
Ver en: http://hdl.handle.net/10261/371745
DIGITAL.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/371745

DIGITAL.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/371745
Set de datos (Dataset). 2024

PAIRWISE SYNTENIC DOT PLOTS BETWEEN CHROMOSOMES OF JELLYFISH (RES) AND BILATERIAN SPECIES [DATASET]

DIGITAL.CSIC. Repositorio Institucional del CSIC
  • Lin, Che-Yi
  • Marlétaz, Ferdinand
  • Pérez-Posada, Alberto
  • Martínez-García, Pedro Manuel
  • Schloissnig, Siegfried
  • Peluso, Paul
  • Conception, Greg T.
  • Bump, Paul
  • Chen, Yi-Chih
  • Chou, Cindy
  • Lin, Ching-Yi
  • Fan, Tzu-Pei
  • Tsai, Chang-Tai
  • Gómez-Skarmeta, José Luis
  • Tena, Juan J.
  • Lowe, Christopher J.
  • Rank, David R.
  • Rokhsar, Daniel S.
  • Yu, Jr-Kai
  • Su, Yi-Hsien
The identified chromosomal rearrangement events in bilaterians are not found in the jellyfish genome. SPU3 was derived from DALG R, which dispersed into other chromosomes in chordates. Since SPU3 corresponds to RES19, the chordate dispersal event did not occur in the jellyfish (a). BFL3 and BFL16 correspond to different RES chromosomes, while their ALGs (DALGs B2 and C2) fused into ambulacraria AALG B2⊗C2. Thus, the ambulacrarian fusion event was not found in the jellyfish (b). Similarly, PYE1 and PYE17 both correspond to ambulacraria AALG B2⊗C2 and match to different RES chromosomes (c). The 4 shared fusion events in spiralians were not found in the jellyfish genome, as sea urchin chromosomes corresponding to fused spiralian chromosomes match to different jellyfish chromosomes (indicated by columns of the same color) (d). The data underlying this figure can be found in S1 Data., Peer reviewed




DIGITAL.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/371788
Set de datos (Dataset). 2024

PAIRWISE SYNTENIC DOT PLOTS BETWEEN CHROMOSOMES OF ECDYSOZOAN SPECIES AND SEA URCHIN (SPU) [DATASET]

DIGITAL.CSIC. Repositorio Institucional del CSIC
  • Lin, Che-Yi
  • Marlétaz, Ferdinand
  • Pérez-Posada, Alberto
  • Martínez-García, Pedro Manuel
  • Schloissnig, Siegfried
  • Peluso, Paul
  • Conception, Greg T.
  • Bump, Paul
  • Chen, Yi-Chih
  • Chou, Cindy
  • Lin, Ching-Yi
  • Fan, Tzu-Pei
  • Tsai, Chang-Tai
  • Gómez-Skarmeta, José Luis
  • Tena, Juan J.
  • Lowe, Christopher J.
  • Rank, David R.
  • Rokhsar, Daniel S.
  • Yu, Jr-Kai
  • Su, Yi-Hsien
Pairwise genome comparisons between ecdysozoans and sea urchin SPU showing complex chromosomal rearrangement events in ecdysozoan species, including nematode (a), prawn (b), and horseshoe crabs (c and d). The butterfly genome seems more conserved than the other examined ecdysozoans (e and f). The 4 spiralian fusion events were not found in butterflies, as sea urchin chromosomes corresponding to fused spiralian chromosomes match to different butterfly chromosomes (indicated by columns of the same color). The data underlying this figure can be found in S1 Data., Peer reviewed




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