Dataset.

Supplementary Materials: Inference of the life cycle of environmental phages from genomic signature distances to their hosts

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/334942
Digital.CSIC. Repositorio Institucional del CSIC
  • Arnau, Vicente
  • Díaz-Villanueva, Wladimiro
  • Mifsut Benet, Jorge
  • Villasante, Paula
  • Beamud, Beatriz
  • Mompó, Paula
  • Sanjuán, Rafael
  • González-Candelas, Fernando
  • Domingo-Calap, Pilar
  • Džunková, Mária
Figure S1: PCA of genomic signatures based on hexamer frequencies of the reference bacteria; Figure S2: k4freq-based distances of the bacterial genera to the reference phages; Figure S3: ROC curves for k4freq and k14exact; Figure S4: Statistical error analysis for different k-mer options; Figure S5: k14exact-based distances of the bacterial genera to the reference phages; Figure S6: Distances of 75 Klebsiella strains to 41 Klebsiella phages; Table S1: Bacterial genomes in the reference set; Table S2: Phage genomes in the reference set; Table S3: Plasmids in the reference set; Table S4: Summary of statistical comparisons of genomic distances; Table S5: Lysogenic activity of K. pneumoniae phages; Table S6: Bacterial single-cells and phages detected in their assemblies., Peer reviewed
 
DOI: http://hdl.handle.net/10261/334942
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/334942

HANDLE: http://hdl.handle.net/10261/334942
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/334942
 
Ver en: http://hdl.handle.net/10261/334942
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/334942

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/334942
Dataset. 2023

SUPPLEMENTARY MATERIALS: INFERENCE OF THE LIFE CYCLE OF ENVIRONMENTAL PHAGES FROM GENOMIC SIGNATURE DISTANCES TO THEIR HOSTS

Digital.CSIC. Repositorio Institucional del CSIC
  • Arnau, Vicente
  • Díaz-Villanueva, Wladimiro
  • Mifsut Benet, Jorge
  • Villasante, Paula
  • Beamud, Beatriz
  • Mompó, Paula
  • Sanjuán, Rafael
  • González-Candelas, Fernando
  • Domingo-Calap, Pilar
  • Džunková, Mária
Figure S1: PCA of genomic signatures based on hexamer frequencies of the reference bacteria; Figure S2: k4freq-based distances of the bacterial genera to the reference phages; Figure S3: ROC curves for k4freq and k14exact; Figure S4: Statistical error analysis for different k-mer options; Figure S5: k14exact-based distances of the bacterial genera to the reference phages; Figure S6: Distances of 75 Klebsiella strains to 41 Klebsiella phages; Table S1: Bacterial genomes in the reference set; Table S2: Phage genomes in the reference set; Table S3: Plasmids in the reference set; Table S4: Summary of statistical comparisons of genomic distances; Table S5: Lysogenic activity of K. pneumoniae phages; Table S6: Bacterial single-cells and phages detected in their assemblies., Peer reviewed




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