Dataset.

Datasets used in The opposed forces of differentiation and admixture across glacial cycles in the butterfly Aglais urticae [V3]

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/361027
Digital.CSIC. Repositorio Institucional del CSIC
  • Marques, Valéria
  • Hinojosa, Joan Carles
  • Dapporto, Leonardo
  • Talavera, Gerard
  • Stefanescu, Constantí
  • Gutiérrez, David
  • Vila, Roger
Au_filtered_PCA.vcf - used as input for PCA, Au_STRUCTURE.str - used as input for STRUCTURE analysis, Au_IQTREE.phy - used as input for phylogenetic inference in IQTREE, Au_PhyloNetworks.loci - used as input to create gene trees for subsequent use in PhyloNetworks analysis, Au_filtered_TreeMix.vcf - used as input for TreeMix analysis, Au_TASSEL_western.vcf; Au_TASSEL_eastern.vcf; Au_TASSEL_central.vcf - used as input for genetic diversity analysis in TASSEL, Au_filtered_dadi.vcf - used to produce SFS file for dadi analysis, Au_EuSicily_hybridsim; Au_EuSierra_hybridsim - used to simulate hybrids with HYBRIDLAB, Peer reviewed
 

DOI: http://hdl.handle.net/10261/361027
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/361027

HANDLE: http://hdl.handle.net/10261/361027
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/361027
 
Ver en: http://hdl.handle.net/10261/361027
Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/361027

Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/361027
Dataset. 2023

DATASETS USED IN THE OPPOSED FORCES OF DIFFERENTIATION AND ADMIXTURE ACROSS GLACIAL CYCLES IN THE BUTTERFLY AGLAIS URTICAE [V3]

Digital.CSIC. Repositorio Institucional del CSIC
  • Marques, Valéria
  • Hinojosa, Joan Carles
  • Dapporto, Leonardo
  • Talavera, Gerard
  • Stefanescu, Constantí
  • Gutiérrez, David
  • Vila, Roger
Au_filtered_PCA.vcf - used as input for PCA, Au_STRUCTURE.str - used as input for STRUCTURE analysis, Au_IQTREE.phy - used as input for phylogenetic inference in IQTREE, Au_PhyloNetworks.loci - used as input to create gene trees for subsequent use in PhyloNetworks analysis, Au_filtered_TreeMix.vcf - used as input for TreeMix analysis, Au_TASSEL_western.vcf; Au_TASSEL_eastern.vcf; Au_TASSEL_central.vcf - used as input for genetic diversity analysis in TASSEL, Au_filtered_dadi.vcf - used to produce SFS file for dadi analysis, Au_EuSicily_hybridsim; Au_EuSierra_hybridsim - used to simulate hybrids with HYBRIDLAB, Peer reviewed




Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/361031
Dataset. 2023

DATASETS USED IN THE OPPOSED FORCES OF DIFFERENTIATION AND ADMIXTURE ACROSS GLACIAL CYCLES IN THE BUTTERFLY AGLAIS URTICAE [V2]

Digital.CSIC. Repositorio Institucional del CSIC
  • Marques, Valéria
  • Hinojosa, Joan Carles
  • Dapporto, Leonardo
  • Talavera, Gerard
  • Stefanescu, Constantí
  • Gutiérrez, David
  • Vila, Roger
Au_filtered_dadi.vcf - used to produce SFS file for dadi analysis, Au_EuSicily_hybridsim; Au_EuSierra_hybridsim - used to simulate hybrids with HYBRIDLAB, Peer reviewed




Digital.CSIC. Repositorio Institucional del CSIC
oai:digital.csic.es:10261/361036
Dataset. 2023

DATASETS USED IN THE OPPOSED FORCES OF DIFFERENTIATION AND ADMIXTURE ACROSS GLACIAL CYCLES IN THE BUTTERFLY AGLAIS URTICAE [V1]

Digital.CSIC. Repositorio Institucional del CSIC
  • Marques, Valéria
  • Hinojosa, Joan Carles
  • Dapporto, Leonardo
  • Talavera, Gerard
  • Stefanescu, Constantí
  • Gutiérrez, David
  • Vila, Roger
Au_filtered_PCA.vcf - used as input for PCA, Au_STRUCTURE.str - used as input for STRUCTURE analysis, Au_IQTREE.phy - used as input for phylogenetic inference in IQTREE, Au_PhyloNetworks.loci - used as input to create gene trees for subsequent use in PhyloNetworks analysis, Au_filtered_TreeMix.vcf - used as input for TreeMix analysis, Au_TASSEL_western.vcf; Au_TASSEL_eastern.vcf; Au_TASSEL_central.vcf - used as input for genetic diversity analysis in TASSEL, Peer reviewed




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