BUSCADOR RECOLECTA

The table lists all the DNA sequences (COI mit) studied to date, of specimens belonging to the Rhyacophila fasciata Group and published in different articles. Due to the progressive increase of sequences obtained in successive publications, they have been compiled in this table for consultation by researchers interested in this material. The document will be updated with new sequences as the following studies are published., The table includes the following information: species and specimen number, sex, locality of collection, latitudinal and longitudinal geographical coordinates, altitude, accession numbers to GenBank, voucher number from Tissues and DNA Collection, voucher number of Entomological Collection, both from Museo Nacional de Ciencias Naturales, Consejo Superior de Investigaciones Científicas (MNCN-CSIC), accession number and/or collection in other Collections, and legit (Leg.) of specimens., No

It is a contribution of the Marine Zooplankton Ecology Group (2017 SGR 87), Proper thermal adaptation is key to understanding how species respond to temperature. However, this is seldom considered in protozooplankton and mixoplankton experiments. In this work, we studied how two heterotrophic dinoflagellates (Gyrodinium dominans and Oxyrrhis marina), one heterotrophic ciliate (Strombidium arenicola), and one mixotrophic dinoflagellate (Karlodinium armiger) responded to warming, comparing strains adapted at 16, 19 and 22 °C and those adapted at 16 °C and exposed for 3 days at 19 and 22 °C (acclimated treatments). Neither CNP contents nor the corresponding elemental ratios showed straightforward changes with temperature, except for a modest increase in P contents with temperature in some grazers. In general, the performance of both acclimated and adapted grazers increased from 16 to 19 °C and then dropped at 22 °C, with a few exceptions. Therefore, our organisms followed the “hotter is better” hypothesis from 16 to 19 °C; above 19 °C, however, the results were variable. Despite the disparity in the responses between species and physiological rates, in general, it seems that 19 °C-adapted organisms performed better than acclimated-only organisms. However, at 22 °C, most species were at the limit of their metabolisms and were unable to fully adapt. Nevertheless, adaptation to higher temperatures conferred some advantages prior to sudden increases in temperature (up to 25 °C) that simulated a heatwave episode. In summary, adaptation to temperature seems to confer a selective advantage to protistan grazers within a narrow range (i.e., ca. 3 °C). Adaptation to much higher temperatures (i.e., 6 °C) does not confer any clear physiological advantage (with few exceptions; e.g., the mixotroph K. armiger), at least within the time frame of our experiments, This research was funded by Grant CTM2017-84288-R by Fondo Europeo de Desarrollo Regional (FEDER)/ Ministerio de Ciencia, Innovación y Universidades—Agencia Estatal de Investigación (AEI), and by Grant PID2020-118645RB-I00 by Ministerio de Ciencia e innovación (MCIN)/AEI/ 10.13039/501100011033 and by “ERDF A way of making Europe”. With the institutional support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S), Para 4 especies: Volumen (µm3/depredador), Tasa crecimiento (µ 1/d), Tasa de ingestion (cells/ind/d), Eficiencia bruta de crecimiento (GGE, %), Peer reviewed

Datos incluidos: Anexo 1. Selección bibliográfica Anexo 2. Selección bibliográfica / Extractos Anexo 3. Selección artículos publicaciones periódicas Anexo 4. Selección fuentes documentales Anexo 5. Índice temático Anexo 6. Fuentes documentales esenciales, El productor y distribuidor de cine, y gran aficionado a la historia, Javier de Garcillán, descubrió de manera fortuita, en un estudio sobre el geógrafo Alexander Dalrymple, la expedición capitaneada por Pedro Fernández de Quirós en 1605. Esta expedición, cuyo mando acabaría en manos del piloto de la segunda nave, Luis Báez de Torres, tras el abandono de Quirós y su regreso a Acapulco, conduciría al descubrimiento del estrecho en 1606, que posteriormente, tomaría el nombre del piloto, Estrecho de Torres. La extrañeza y sorpresa que produjo en Garcillán la intranscendencia de este hecho, junto a la casi ausencia de estudios de la historiografía española sobre esta “hazaña marinera”, estimularon la curiosidad del distribuidor. En torno a 1998, comenzó un trabajo de recopilación de fuentes que le llevó a visitar desde los grandes archivos, bibliotecas y librerías de nuestro país hasta los más importantes del continente australiano, pasando por todos aquellos de cualquier país (Italia, Estados Unidos, Gran Bretaña…) en los que pudiera “descubrir” nuevos documentos que arrojaran luz sobre este hecho histórico y que facilitaran el “acceso” al laberinto. Su objetivo “la publicación de un libro de gran formato y divulgación en una editorial comercial que sirviera de base a la elaboración y distribución de una película documental” quedó desgraciadamente cercenado con la muerte de Javier de Garcillán en el año 2007. En 2013, este extenso fondo documental llegó al CCHS - CSIC de la mano de la investigadora Ana Rodríguez y la productora López Li Films. En él hemos “buceado” con el objeto de destacar aquellas fuentes que “iluminen” el proceso del descubrimiento, “Esta investigación ha recibido financiada por el Ministerio de Economía y Competitividad (MINECO). Ref.: HAR2011-15924-E”, Peer reviewed

Examination of relevant type materials and living plants reveals that Rungia axilliflora, R. densiflora and R. evrardii are conspecific with R. stolonifera. Lectotypes are designated for the names R. evrardii and R. stolonifera., Peer reviewed

Usage Notes: Description_data_GSE_Global_pigs Table describing the samples. Note that the submitted data includes a few animals that were removed from the paper due to additional constraints applied in the review process. GSE_global_pigs.map PLINK MAP file, describing the SNPs used. GSE_global_pigs.ped Genotype data used in PLINK PED file format., [Background]: Pigs were domesticated independently in Eastern and Western Eurasia early during the agricultural revolution, and have since been transported and traded across the globe. Here, we present a worldwide survey on 60K genome-wide single nucleotide polymorphism (SNP) data for 2093 pigs, including 1839 domestic pigs representing 122 local and commercial breeds, 215 wild boars, and 39 out-group suids, from Asia, Europe, America, Oceania and Africa. The aim of this study was to infer global patterns in pig domestication and diversity related to demography, migration, and selection., [Results]: A deep phylogeographic division reflects the dichotomy between early domestication centers. In the core Eastern and Western domestication regions, Chinese pigs show differentiation between breeds due to geographic isolation, whereas this is less pronounced in European pigs. The inferred European origin of pigs in the Americas, Africa, and Australia reflects European expansion during the sixteenth to nineteenth centuries. Human-mediated introgression, which is due, in particular, to importing Chinese pigs into the UK during the eighteenth and nineteenth centuries, played an important role in the formation of modern pig breeds. Inbreeding levels vary markedly between populations, from almost no runs of homozygosity (ROH) in a number of Asian wild boar populations, to up to 20% of the genome covered by ROH in a number of Southern European breeds. Commercial populations show moderate ROH statistics. For domesticated pigs and wild boars in Asia and Europe, we identified highly differentiated loci that include candidate genes related to muscle and body development, central nervous system, reproduction, and energy balance, which are putatively under artificial selection., [Conclusions]: Key events related to domestication, dispersal, and mixing of pigs from different regions are reflected in the 60K SNP data, including the globalization that has recently become full circle since Chinese pig breeders in the past decades started selecting Western breeds to improve local Chinese pigs. Furthermore, signatures of ongoing and past selection, acting at different times and on different genetic backgrounds, enhance our insight in the mechanism of domestication and selection. The global diversity statistics presented here highlight concerns for maintaining agrodiversity, but also provide a necessary framework for directing genetic conservation., Peer reviewed

Software https://treeoflife.kew.org https://github.com/RBGKew/KewTreeOfLife, The tree of life is the fundamental biological roadmap for navigating the evolution and properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering plants) are fraught with data gaps, despite their critical role in sustaining terrestrial life. Today, high-throughput sequencing promises to significantly deepen our understanding of evolutionary relationships. Here, we describe a comprehensive phylogenomic platform for exploring the angiosperm tree of life, comprising a set of open tools and data based on the 353 nuclear genes targeted by the universal Angiosperms353 sequence capture probes. The primary goals of this paper are to (i) document our methods, (ii) describe our first data release and (iii) present a novel open data portal, the Kew Tree of Life Explorer (https://treeoflife.kew.org). We aim to generate novel target sequence capture data for all genera of flowering plants, exploiting natural history collections such as herbarium specimens, and augment it with mined public data. Our first data release, described here, is the most extensive nuclear phylogenomic dataset for angiosperms to date, comprising 3,099 samples validated by DNA barcode and phylogenetic tests, representing all 64 orders, 404 families (96%) and 2,333 genera (17%). A “first pass” angiosperm tree of life was inferred from the data, which totalled 824,878 sequences, 489,086,049 base pairs, and 532,260 alignment columns, for interactive presentation in the Kew Tree of Life Explorer. This species tree was generated using methods that were rigorous, yet tractable at our scale of operation. Despite limitations pertaining to taxon and gene sampling, gene recovery, models of sequence evolution and paralogy, the tree strongly supports existing taxonomy, while challenging numerous hypothesized relationships among orders and placing many genera for the first time. The validated dataset, species tree and all intermediates are openly accessible via the Kew Tree of Life Explorer and will be updated as further data become available. This major milestone towards a complete tree of life for all flowering plant species opens doors to a highly integrated future for angiosperm phylogenomics through the systematic sequencing of standardised nuclear markers. Our approach has the potential to serve as a much-needed bridge between the growing movement to sequence the genomes of all life on Earth and the vast phylogenomic potential of the world’s natural history collections., Calleva Foundation. Sackler Trust. Garfield Weston Foundation, Peer reviewed

[EN] Contains one compressed folder (.zip) with a shapefile (flood.shp; requires a specific Geographic Information System GIS software), one PDF file and an excel file (PIRAGUA_FLOOD; requires Microsoft Excel or compatible software)., [EN] Geospatial information about flood events per municipality for different categories in basis to impacts, compiled for the period 1981-2015 in the Pyrenees (France, Spain and Andorra), generated within the project EFA210/16 PIRAGUA Project ("Evaluation and prospective of the water resources of the Pyrenees in a context of climate change, and adaptation measures with impact on the territory")., [ES] Información geoespacial sobre eventos de inundaciones por municipio distinguiendo en categorías según su impacto, recopilada para el periodo 1981-2015 en los Pirineos, generada en el contexto del proyecto EFA210/16 PIRAGUA ("Evaluación y prospectiva de los recursos hídricos de los Pirineos en un contexto de cambio climático, y medidas de adaptación con impacto en el territorio")., [FR] Information géospatiale sur les événements d'inondation par municipalité en distinguant les catégories en fonction de leur impact, recueillies pour la période 1981-2015 dans les Pyrénées, générées dans le cadre du projet EFA210/16 PIRAGUA ("Evaluation et prospective des ressources en eau des Pyrénées dans un contexte de changement climatique, et mesures d'adaptation ayant un impact sur le territoire")., This dataset was developed within the project EFA210/16 PIRAGUA (“Evaluación y prospectiva de los recursos hídricos de los Pirineos en un contexto de cambio climático, y medidas de adaptación con impacto en el territorio / Evaluation et prospective des ressources en eau des Pyrénées dans un contexte de changement climatique, et mesures d’adaptation avec un impact sur le territoire”), co-funded by the European Regional Development Fund (ERDF) through the Interreg V-A Spain France Andorra program (POCTEFA 2014-2020) (65%) and the project’s partners: CSIC, UPV/EHU, UB, OE, IGME, CNRS, BRGM, INRAE and OBSA (35%)., Files in the data set:- flood.sho: Arc-GIS shapefiles with the flood database, at the municipal level., Peer reviewed

Rain and Hail intensity. Cuerda del Pozo. April 2013, Peer reviewed

Rain and Hail intensity. Cuerda del Pozo. April 2013, Peer reviewed

Wind Direction and speed in CDP, Peer reviewed