BUSCADOR RECOLECTA

Supplementary material: Table S1. Alpha-diversity is expressed as Observed Species, Shannon, and Simpson indexes. Letters denote statistically significant differences between samples and times. Differences regarding the control that are statistically significant (p < 0.05) are marked in gray. Table S2. Genus level. Mean relative abundances (%) and standard deviation. Only genus with a mean relative abundance >0.5% and/or statistically significant were considered. Statistical differences (p-adjust < 0.05) regarding the control and PLAg/PLAm for each volunteer are highlighted, in gray if they appear only for one volunteer or in orange if they are common to at least two volunteers. Table S3. Concentration (µM) of short-chain fatty acids (SCFAs) at different colonic fermentation times. Table S4. Lactate concentration (µg/mL) at different colonic fermentation times. Table S5. Predicted bacterial pathways present in PLAm and PLAg samples from colonic fermentation simulations for the three volunteers. Only statistically different features comparing to control (q-value<0.05) and with a mean relative abundance >0.01% are shown. met. = metabolism. deg. = degradation. Table S6. Predicted bacterial genes (i.e., enzymes and proteins) present in PLAm and PLAg samples from colonic fermentation simulations for the three volunteers. Only statistically different features comparing to control (q-value<0.05). and with a mean relative abundance >0.01% are shown. Figure S1. Beta-diversity plots of the three volunteers (0, 24, 48, and 72 h) and the different conditions tested (control, PLAg, and PLAm)., Peer reviewed

This PDF file includes: Figs. S1 to S10 Legends for tables S1 to S6, Other Supplementary Material includes the following: Tables S1 to S6, Peer reviewed

Additional STM topographs and spectroscopy data and further results from DFT calculations., Peer reviewed

Expression for the circularly polarized fundamental field convenient for an analysis of nonlinear effects; definition of the charge multipoles in cylindrical coordinates and induced potential of the nanowire; analysis of the induced nonlinear near field; definition of the linear multipolar polarizabilities; discussion on the time-to-frequency Fourier transform used to analyze the time-dependent results of the TDDFT and to obtain the frequency-resolved quantities; classical nonretarded calculations of the linear response; extended discussion of the symmetry constraints for the bulk contribution to nonlinear polarization; derivation of the selection rules based on the nonlinear density response formalism; results showing magnetization of the nanowire by a circularly polarized fundamental field pulse; and discussion of the Friedel oscillations of the ground-state electron density (PDF). Time evolution of the charge density induced in the nanowire, δϱ(n)(r, t) = Re{δϱ(r, nΩ)e–inΩt }, at the fundamental frequency (n = 1) for circular polarization with SAM = 1 of the incoming field (MP4). Time evolution of the charge density induced in the nanowire, δϱ(n)(r, t) = Re{δϱ(r, nΩ)e–inΩt }, at the n = 2 harmonic for circular polarization with SAM = 1 of the incoming field (MP4). Time evolution of the charge density induced in the nanowire, δϱ(n)(r, t) = Re{δϱ(r, nΩ)e–inΩt }, at the n = 3 harmonic for circular polarization with SAM = 1 of the incoming field (MP4). Time evolution of the charge density induced in the nanowire, δϱ(n)(r, t) = Re{δϱ(r, nΩ)e–inΩt }, at n = 4 harmonic for circular polarization with SAM = 1 of the incoming field (MP4). Time evolution of the charge density induced in the nanowire, δϱ(n)(r, t) = Re{δϱ(r, nΩ)e–inΩt }, at the fundamental frequency (n = 1) for linear polarization of the incoming field (MP4). Time evolution of the charge density induced in the nanowire, δϱ(n)(r, t) = Re{δϱ(r, nΩ)e–inΩt }, at the n = 2 harmonic for linear polarization of the incoming field (MP4). Time evolution of the charge density induced in the nanowire, δϱ(n)(r, t) = Re{δϱ(r, nΩ)e–inΩt }, at the n = 3 harmonic for linear polarization of the incoming field (MP4). Time evolution of the charge density induced in the nanowire, δϱ(n)(r, t) = Re{δϱ(r, nΩ)e–inΩt }, at the n = 4 harmonic for linear polarization of the incoming field (MP4)., Peer reviewed

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List of Figures: S1 Graph of the half-period of the center (p. 2).-- S2 Time series for different diffusion values and distances to the bifurcation point (p. 3).-- S3 Transient times for initial populations with growing spatial regions below the ghost bottleneck (p. 4).-- S4 Effect of the different initial spatial distribution of cooperators on extinction times (p. 5).-- S5 Time to extinction from an initial spatial distribution with random gaps depending on gap frequency close to the bifurcation (p. 6).-- S6 Time to extinction from random gap distribution far from the bifurcation (p. 7).-- S7 Phase portraits for different values of diffusion before the bifurcation in the two-patch model (p. 8).-- S8 Phase portraits depending on diffusion after the bifurcation in the two-patch model (p. 9).-- S9 Times to extinction dependence on initial conditions in the two-patch model: homogeneous and heterogeneous extinctions (p. 10).-- S10 Comparison of ghost phenomena depending on diffusion in the two-patch model (p. 11)., No

The study combined the use of biometric, behavioral, physiological and external tissue damage scoring systems to better understand how high stocking densities drive schooling behavior and other adaptive features during the finishing growing phase of farmed gilthead sea bream in the Western Mediterranean. Fish were grown at three different final stocking densities (LD, 8.5 kg/m3; MD, 17 kg/m3; HD, 25 kg/m3). Water oxygen concentration varied between 5 and 6 ppm in LD fish to 3–4 ppm in HD fish with the summer rise of water temperature from 19°C to 26°C (May–July). HD fish showed a reduction of feed intake and growth rates, but they also showed a reinforced social cohesion with a well-defined endogenous swimming activity rhythm with feeding time as a main synchronization factor. The monitored decrease of the breathing/swimming activity ratio by means of the AEFishBIT data-logger also indicated a decreased energy partitioning for growth in the HD environment with a limited oxygen availability. Plasma glucose and cortisol levels increased with the rise of stocking density, and the close association of glycaemia with the expression level of antioxidant enzymes (mn-sod, gpx4, prdx5) in liver and molecular chaperones (grp170, grp75) in skeletal muscle highlighted the involvement of glucose in redox processes via rerouting in the pentose-phosphate-pathway. Other adaptive features included the depletion of oxidative metabolism that favored lipid storage rather than fatty acid oxidation to decrease the oxygen demand as last electron acceptor in the mitochondrial respiratory chain. This was coincident with the metabolic readjustment of the Gh/Igf endocrine-growth cascade that promoted the regulation of muscle growth at the local level rather than a systemic action via the liver Gh/Igf axis. Moreover, correlation analyses within HD fish displayed negative correlations of hepatic transcripts of igf1 and igf2 with the data-logger measurements of activity and respiration, whereas the opposite was found for muscle igf2, ghr1 and ghr2. This was indicative of a growth-regulatory transition that supported a proactive instead of a reactive behavior in HD fish, which was considered adaptive to preserve an active and synchronized feeding behavior with a minimized risk of oxidative stress and epidermal skin damage., Peer reviewed

Data for the publication in Journal of Ecology: Phylogenetic diversity is a weak proxy for functional diversity but they are complementary in explaining community assembly patterns in temperate vegetation, long-term research development project of the Czech Academy of Sciences (RVO 67985939) Czech Science Foundation (project 19-28491X), Peer reviewed