Dataset. 2023

Automatic labeling of vascular structures with topological constraints via HMM [Research data]

CORA.Repositori de Dades de Recerca
doi:10.34810/data438
CORA.Repositori de Dades de Recerca
  • Wang, Xingce
  • Liu, Yue
  • Wu, Zhongke
  • Mou, Xiao
  • Zhou, Mingquan
  • González Ballester, Miguel Ángel, 1973-
The project contains the implementation of the method described in: Wang et al., "Automatic labeling of vascular structures with topological constraints via HMM", MICCAI 2017. We propose a novel graph labeling approach to anatomically label vascular structures of interest. Our algorithm can handle different topologies, like circle, chain and tree. By using coordinate independent geometrical features, it does not require prior global alignment.
 
DOI: https://doi.org/10.34810/data438
CORA.Repositori de Dades de Recerca
doi:10.34810/data438

HANDLE: https://doi.org/10.34810/data438
CORA.Repositori de Dades de Recerca
doi:10.34810/data438
 
Ver en: https://doi.org/10.34810/data438
CORA.Repositori de Dades de Recerca
doi:10.34810/data438

Recercat. Dipósit de la Recerca de Catalunya
oai:recercat.cat:2072/316902
Publicaciones de conferencias: comunicaciones, ponencias, pósters, etc (conferenceObject).

AUTOMATIC LABELING OF VASCULAR STRUCTURES WITH TOPOLOGICAL CONSTRAINTS VIA HMM

Recercat. Dipósit de la Recerca de Catalunya
  • Wang, Xingce
  • Liu, Yue
  • Wu, Zhongke
  • Mou, Xiao
  • Zhou, Mingquan
  • González Ballester, Miguel Ángel, 1973-
  • Zhang, Chong
Comunicació presentada a: the 20th International Conference on Medical Image Computing and Computer Assisted Intervention 2017 (MICCAI 2017), celebrada del 10 al 14 de setembre de 2017 a Quebec, Canadà., Identifcation of anatomical vessel branches is a prerequisite task for diagnosis, treatment and inter-subject comparison. We propose a novel graph labeling approach to anatomically label vascular structures of interest. Our method frst extracts bifurcations of interest from the centerlines of vessels, where a set of geometric features are also calculated from. Then the probability distribution of every bifurcation is learned using a XGBoost classifer. Finally a Hidden Markov Model with a restricted transition strategy is constructed in order to nd the most likely labeling confguration of the whole structure, while also enforcing topological consistency. In this paper, the proposed approach has been evaluated through leave-one-out cross validation on 50 subjects of centerlines obtained from MRA images of healthy volunteers' Circle of Willis. Results demonstrate that our method can achieve higher accuracy and specifcity, while obtaining similar precision and recall, when comparing to the best performing state-of-the-art methods. Our algorithm can handle diferent topologies, like circle, chain and tree. By using coordinate independent geometrical features, it does not require prior global alignment. Source code and data are available under http://doi.org/10.5281/zenodo.809931., This research was partially supported by the Chinese High-Technical Research Development Foundation (863) Program (No.2015AA020506), Beijing Natural Science Foundation of China(No.4172033), the Spanish Ministry of Economy and Competitiveness, through the Maria de Maeztu Programme for Centres/Units of Excellence in R&D (MDM-2015-0502), and the Spanish Ministry of Economy and Competitiveness (DEFENSE project, TIN2013-47913-C3-1-R).




CORA.Repositori de Dades de Recerca
doi:10.34810/data438
Dataset. 2023

AUTOMATIC LABELING OF VASCULAR STRUCTURES WITH TOPOLOGICAL CONSTRAINTS VIA HMM [RESEARCH DATA]

CORA.Repositori de Dades de Recerca
  • Wang, Xingce
  • Liu, Yue
  • Wu, Zhongke
  • Mou, Xiao
  • Zhou, Mingquan
  • González Ballester, Miguel Ángel, 1973-
The project contains the implementation of the method described in: Wang et al., "Automatic labeling of vascular structures with topological constraints via HMM", MICCAI 2017. We propose a novel graph labeling approach to anatomically label vascular structures of interest. Our algorithm can handle different topologies, like circle, chain and tree. By using coordinate independent geometrical features, it does not require prior global alignment.