[EN] Dataset of publicly available biodiversity information of mosses records for the Iberian Peninsula (mainland Portugal and Spain, plus the Balearic Islands, Andorra and Gibraltar). It contains 82,582 occurrences result of the compilation, cleaning, enrichment and validation from the Global Biodiversity Information Facility (GBIF; Access on 8 August 2018 for Spain and Portugal, and 9 October 2018 for Andorra and Gibraltar; phylum=Bryophyta), and 2 available PhD catalogues of Spain (Cezón, K. & Muñoz J.(2013). Catálogo de los musgos de Castilla La Mancha (España), J. Bol. Soc. Esp. Briol. 40-41:15-41; and Medina, N.G.; Mazimpaka, V.; Hortal, J. & Lara (2015). Catálogo de los briófitos epífitos que crecen en bosques de quercíneas del cuadrante noroccidental ibérico’, F. Bol. Soc. Esp. Briol. 44-45: 1-30.).
This database was created to assess and quantify the knowledge of the distribution information of Iberian mosses and defining their biases and gaps., [ES] Conjunto de datos con los 82512 registros disponibles públicamente de presencias de musgos en la península Ibérica (incluyendo Portugal y España peninsular con las Islas Baleares, Andorra y Gibraltar). Son el resultado de la compilación, limpieza, validación y enriquecimiento de datos presentes en el portal de datos de biodiversidad 'Global Biodiversity Information Facility' (GBIF; Acceso el 8 agosto 2018 para España y Portugal, y 9 octubre 2018 para Andorra y Gibraltar; phylum=Bryophyta) y los catálogos de Cezón, K. y Muñoz J. (2013). Catálogo de los musgos de Castilla La Mancha (España), J. Bol. Soc. Esp. Briol. 40-41:15-41; y Medina, N.G.; Mazimpaka, V.; Hortal, J. & Lara (2015). Catálogo de los briófitos epífitos que crecen en bosques de quercíneas del cuadrante noroccidental ibérico’, F. Bol. Soc. Esp. Briol. 44-45: 1-30.).
Esta base de datos fue creada con el objetivo de realizar análisis de sesgos y déficits de conocimiento en los musgos de la península Ibérica (Ronquillo et al, not published)., This work is part of the project UNITED Unifying niches, interactions and distributions: A common theoretical framework for geographic range dynamics and local coexistence (CGL2016-78070-P, funded by AEI/FEDER, UE)., Peer reviewed

[Material and methods] In this experiment six ground moss species were utilized.

• Ptychostomum capillare (Hedw.) D.T. Holyoak & N. Pedersen [== Bryum capillare Hedw.]
• Dicranum scoparium Hedw.
• Homalothecium aureum H. Rob.
• Hypnum cupressiforme Hedw.
• Tortella squarrosa (Brid.) Limpr. [== Pleurochaete squarrosa (Brid.) Lindb.]
• Syntrichia ruralis (Hedw.) F. Weber & D. Moh.

For the moss stand inoculation, seedbed pots with synthetic wadding as the growth substrate were used.
The experimental units were placed in three different locations along a 100-kilometer altitudinal gradient in Central Spain, specifically at:

• Estación Biológica “El Ventorrillo” (VENT), Madrid, Spain (1482 meters above sea level - m.a.s.l.)
• Universidad Autónoma de Madrid (UAM), Madrid, Spain (717 m.a.s.l.)
• Finca Experimental “La Higueruela” (HIG), Toledo, Spain (455 m.a.s.l.)

The pictures were captured using two Mapir Survey 2 cameras (https://www.mapir.camera/). One camera had an RGB sensor for visual wavelengths, while the other had a Red + NIR sensor for near-infrared. The manufacturer adjusted the focal distance to approximately 25 cm from the samples. Both cameras were equipped with a 16MP Sony Exmor IMX206 sensor, featuring a Bayer RGB pattern. The red absorption occurred at 660 nm, and near-infrared was captured at 850 nm.

We employed a transparent plastic light diffuser box with an interior lining of white paper, such as filter paper. This setup served to even out the lighting and reduce the appearance of harsh shadows. Each image included the samples, a colour chart (specifically, the X-Rite ColorChecker® Classic) for calibration, as detailed in prior works (Ritchie et al., 2008; Fischer et al., 2012), and a millimetre scale for calculating the pixel-to-millimetre ratio. Moss samples were labelled in each hollow.

The cameras saved the images in raw format and we converted it to tif format without compression using Darktable 2.6.1 software (https://www.darktable.org/) (‘Darktable’, 2019). Then we used ImageJ software (Schindelin et al., 2012) to align each pair of NIR-VIS images and to homogenize colour histograms for each VIS and NIR image series in each locality. The ImageJ scripts are provided by Photomoss protocol (Molina-Bustamante et al., 2022)., This dataset contains a set of images that display moss samples from six distinct species over seedling trays from a common garden experimental set-up. We grow these moss samples on a background of white synthetic material. The capture of the images was in both near-infrared and visible light wavelengths. We provide additional files to fit the main dataset objective: use it as a test platform for evaluating the PhotomossR package. In this repository, you will discover images taken in both the near-infrared and visible light spectrums. These images offer comprehensive data for testing different spectral indices using the PhotomossR package (Molina-Bustamante, DeCastro-Arrazola, Doherty, & Medina, 2022)., This work is part of the projects UNITED (CGL2016-78070-P, funded by Spanish Agencia Estatal de Investigación [AEI] and Fondo Europeo de Desarrollo Regional [FEDER] European Union) and SCENIC (PID2019-106840GA-C21 and PID2019-106840GA-C22, funded by Spanish Ministerio de Ciencia e Innovación [MCIN] and AEI), M. M-B was funded by the Comunidad de Madrid, and the European Social Fund that co-financed through the Youth Employment Operational Program and the Youth Employment Initiative (YEI) grant PEJ-2017-AI/AMB-6504., Contains 5 folders based on the locality and date of image capture. Within each locality folder, there are 4 subfolders (nir, vis, rois, mask) and a 'names.csv' file that provides label names for the samples. • "nir" folder with images in the infrared spectrum. Images named by the date of capture. • "vis" folder with images in the visible spectrum. Images named by the date of capture. • "rois" folder that includes roi files. Inside this folder, there are as many subfolders as images in “nir” and “vis” folders. Each subfolder containing the roi files corresponding to the samples we want to analyse in each of the images. • "mask" folder with binary images of moss samples. Files are numerically named.in the order PhotomossR will analyse it., No